Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11120

Experiment: 24hr PHYTO10 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11110 and BPHYT_RS11115 are separated by 191 nucleotidesBPHYT_RS11115 and BPHYT_RS11120 are separated by 82 nucleotidesBPHYT_RS11120 and BPHYT_RS11125 are separated by 239 nucleotidesBPHYT_RS11125 and BPHYT_RS11130 are separated by 36 nucleotides BPHYT_RS11110: BPHYT_RS11110 - chemotaxis protein CheY, at 2,524,442 to 2,526,415 _RS11110 BPHYT_RS11115: BPHYT_RS11115 - hypothetical protein, at 2,526,607 to 2,526,849 _RS11115 BPHYT_RS11120: BPHYT_RS11120 - ferredoxin--NADP reductase, at 2,526,932 to 2,527,981 _RS11120 BPHYT_RS11125: BPHYT_RS11125 - alkylhydroperoxidase, at 2,528,221 to 2,528,658 _RS11125 BPHYT_RS11130: BPHYT_RS11130 - chemotaxis protein, at 2,528,695 to 2,530,269 _RS11130 Position (kb) 2526 2527 2528Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2526.177 kb on + strand, within BPHYT_RS11110at 2526.321 kb on + strandat 2526.429 kb on - strandat 2527.015 kb on - strandat 2527.020 kb on + strandat 2528.002 kb on + strandat 2528.003 kb on - strandat 2528.003 kb on - strandat 2528.243 kb on - strandat 2528.369 kb on - strand, within BPHYT_RS11125at 2528.823 kb on + strandat 2528.920 kb on - strand, within BPHYT_RS11130

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO10 MOI 10
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2,526,177 + BPHYT_RS11110 0.88 +0.0
2,526,321 + -0.2
2,526,429 - +0.9
2,527,015 - -1.2
2,527,020 + +0.7
2,528,002 + +3.3
2,528,003 - +1.0
2,528,003 - +0.7
2,528,243 - -1.9
2,528,369 - BPHYT_RS11125 0.34 -1.4
2,528,823 + -0.1
2,528,920 - BPHYT_RS11130 0.14 -0.4

Or see this region's nucleotide sequence