Experiment: 24hr PHYTO10 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04165 and BPHYT_RS04170 are separated by 38 nucleotides BPHYT_RS04170 and BPHYT_RS04175 are separated by 309 nucleotides BPHYT_RS04175 and BPHYT_RS04180 are separated by 432 nucleotides
BPHYT_RS04165: BPHYT_RS04165 - hypothetical protein, at 956,368 to 956,772
_RS04165
BPHYT_RS04170: BPHYT_RS04170 - hypothetical protein, at 956,811 to 957,092
_RS04170
BPHYT_RS04175: BPHYT_RS04175 - hypothetical protein, at 957,402 to 958,118
_RS04175
BPHYT_RS04180: BPHYT_RS04180 - sugar ABC transporter substrate-binding protein, at 958,551 to 959,798
_RS04180
Position (kb) 957
958
959 Strain fitness (log2 ratio) -1
0
1
2 at 956.405 kb on - strand at 956.527 kb on + strand, within BPHYT_RS04165 at 956.527 kb on + strand, within BPHYT_RS04165 at 956.619 kb on + strand, within BPHYT_RS04165 at 956.772 kb on + strand at 956.772 kb on + strand at 956.772 kb on + strand at 956.800 kb on - strand at 956.872 kb on - strand, within BPHYT_RS04170 at 956.968 kb on + strand, within BPHYT_RS04170 at 956.969 kb on - strand, within BPHYT_RS04170 at 957.104 kb on + strand at 957.249 kb on + strand at 957.352 kb on - strand at 957.508 kb on + strand, within BPHYT_RS04175 at 957.508 kb on + strand, within BPHYT_RS04175 at 957.508 kb on + strand, within BPHYT_RS04175 at 957.509 kb on - strand, within BPHYT_RS04175 at 957.601 kb on + strand, within BPHYT_RS04175 at 957.669 kb on - strand, within BPHYT_RS04175 at 957.669 kb on - strand, within BPHYT_RS04175 at 957.697 kb on + strand, within BPHYT_RS04175 at 957.697 kb on + strand, within BPHYT_RS04175 at 957.872 kb on - strand, within BPHYT_RS04175 at 957.917 kb on - strand, within BPHYT_RS04175 at 957.958 kb on - strand, within BPHYT_RS04175 at 958.096 kb on + strand at 958.096 kb on + strand at 958.202 kb on + strand at 958.367 kb on + strand at 958.368 kb on - strand at 958.389 kb on + strand at 958.447 kb on + strand at 958.492 kb on + strand at 958.552 kb on + strand at 958.638 kb on - strand at 958.730 kb on - strand, within BPHYT_RS04180 at 958.798 kb on + strand, within BPHYT_RS04180 at 958.799 kb on - strand, within BPHYT_RS04180 at 958.916 kb on - strand, within BPHYT_RS04180 at 958.916 kb on - strand, within BPHYT_RS04180 at 958.934 kb on + strand, within BPHYT_RS04180 at 958.956 kb on - strand, within BPHYT_RS04180 at 958.956 kb on - strand, within BPHYT_RS04180
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO10 MOI 10 remove 956,405 - +0.0 956,527 + BPHYT_RS04165 0.39 -0.3 956,527 + BPHYT_RS04165 0.39 -0.9 956,619 + BPHYT_RS04165 0.62 -0.2 956,772 + -0.4 956,772 + +0.2 956,772 + +0.5 956,800 - +1.8 956,872 - BPHYT_RS04170 0.22 +0.0 956,968 + BPHYT_RS04170 0.56 +2.1 956,969 - BPHYT_RS04170 0.56 +0.5 957,104 + +0.4 957,249 + -0.8 957,352 - +0.3 957,508 + BPHYT_RS04175 0.15 +0.9 957,508 + BPHYT_RS04175 0.15 +1.0 957,508 + BPHYT_RS04175 0.15 +0.1 957,509 - BPHYT_RS04175 0.15 -0.2 957,601 + BPHYT_RS04175 0.28 -0.1 957,669 - BPHYT_RS04175 0.37 +2.6 957,669 - BPHYT_RS04175 0.37 +0.7 957,697 + BPHYT_RS04175 0.41 +0.1 957,697 + BPHYT_RS04175 0.41 +0.9 957,872 - BPHYT_RS04175 0.66 +0.0 957,917 - BPHYT_RS04175 0.72 -0.4 957,958 - BPHYT_RS04175 0.78 -0.0 958,096 + -0.2 958,096 + +0.2 958,202 + +1.1 958,367 + +0.8 958,368 - -0.7 958,389 + -0.5 958,447 + +0.3 958,492 + -1.5 958,552 + -0.8 958,638 - +0.6 958,730 - BPHYT_RS04180 0.14 -1.4 958,798 + BPHYT_RS04180 0.20 +0.9 958,799 - BPHYT_RS04180 0.20 -0.6 958,916 - BPHYT_RS04180 0.29 +0.4 958,916 - BPHYT_RS04180 0.29 -0.2 958,934 + BPHYT_RS04180 0.31 -0.6 958,956 - BPHYT_RS04180 0.32 -0.1 958,956 - BPHYT_RS04180 0.32 -0.8
Or see this region's nucleotide sequence