Experiment: 24hr PHYTO10 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03230 and BPHYT_RS03235 are separated by 118 nucleotides BPHYT_RS03235 and BPHYT_RS03240 are separated by 140 nucleotides
BPHYT_RS03230: BPHYT_RS03230 - acetyl-CoA acetyltransferase, at 726,094 to 727,293
_RS03230
BPHYT_RS03235: BPHYT_RS03235 - enoyl-CoA hydratase, at 727,412 to 728,182
_RS03235
BPHYT_RS03240: BPHYT_RS03240 - formate dehydrogenase accessory protein FdhD, at 728,323 to 729,162
_RS03240
Position (kb) 727
728
729 Strain fitness (log2 ratio) -1
0
1 at 726.492 kb on + strand, within BPHYT_RS03230 at 726.492 kb on + strand, within BPHYT_RS03230 at 726.493 kb on - strand, within BPHYT_RS03230 at 726.513 kb on + strand, within BPHYT_RS03230 at 726.548 kb on - strand, within BPHYT_RS03230 at 726.849 kb on + strand, within BPHYT_RS03230 at 726.850 kb on - strand, within BPHYT_RS03230 at 726.850 kb on - strand, within BPHYT_RS03230 at 726.850 kb on - strand, within BPHYT_RS03230 at 727.228 kb on + strand at 727.228 kb on + strand at 727.229 kb on - strand at 727.261 kb on - strand at 727.423 kb on + strand at 727.493 kb on - strand, within BPHYT_RS03235 at 727.505 kb on + strand, within BPHYT_RS03235 at 727.505 kb on + strand, within BPHYT_RS03235 at 728.205 kb on + strand at 728.346 kb on + strand at 728.347 kb on - strand at 728.360 kb on + strand at 728.361 kb on - strand at 728.493 kb on - strand, within BPHYT_RS03240 at 728.493 kb on - strand, within BPHYT_RS03240 at 729.165 kb on + strand at 729.166 kb on - strand at 729.166 kb on - strand at 729.166 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO10 MOI 10 remove 726,492 + BPHYT_RS03230 0.33 -0.1 726,492 + BPHYT_RS03230 0.33 -0.6 726,493 - BPHYT_RS03230 0.33 +0.4 726,513 + BPHYT_RS03230 0.35 +0.0 726,548 - BPHYT_RS03230 0.38 +1.2 726,849 + BPHYT_RS03230 0.63 +0.2 726,850 - BPHYT_RS03230 0.63 +1.4 726,850 - BPHYT_RS03230 0.63 -1.1 726,850 - BPHYT_RS03230 0.63 +0.4 727,228 + +0.3 727,228 + -1.4 727,229 - -0.5 727,261 - -0.9 727,423 + +0.3 727,493 - BPHYT_RS03235 0.11 -0.4 727,505 + BPHYT_RS03235 0.12 -0.8 727,505 + BPHYT_RS03235 0.12 -0.2 728,205 + +0.7 728,346 + +0.5 728,347 - -1.1 728,360 + -1.1 728,361 - +0.5 728,493 - BPHYT_RS03240 0.20 -1.3 728,493 - BPHYT_RS03240 0.20 -0.6 729,165 + +0.5 729,166 - -1.6 729,166 - -1.3 729,166 - -0.4
Or see this region's nucleotide sequence