Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29160

Experiment: 24hr PHYTO4 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29150 and BPHYT_RS29155 are separated by 69 nucleotidesBPHYT_RS29155 and BPHYT_RS29160 are separated by 48 nucleotidesBPHYT_RS29160 and BPHYT_RS29165 are separated by 708 nucleotides BPHYT_RS29150: BPHYT_RS29150 - lysine transporter LysE, at 2,095,656 to 2,096,294 _RS29150 BPHYT_RS29155: BPHYT_RS29155 - hypothetical protein, at 2,096,364 to 2,096,711 _RS29155 BPHYT_RS29160: BPHYT_RS29160 - transporter, at 2,096,760 to 2,098,472 _RS29160 BPHYT_RS29165: BPHYT_RS29165 - hypothetical protein, at 2,099,181 to 2,100,038 _RS29165 Position (kb) 2096 2097 2098 2099Strain fitness (log2 ratio) -1 0 1at 2095.914 kb on + strand, within BPHYT_RS29150at 2096.208 kb on + strand, within BPHYT_RS29150at 2096.424 kb on + strand, within BPHYT_RS29155at 2096.425 kb on - strand, within BPHYT_RS29155at 2096.478 kb on + strand, within BPHYT_RS29155at 2096.479 kb on - strand, within BPHYT_RS29155at 2096.518 kb on - strand, within BPHYT_RS29155at 2096.640 kb on - strand, within BPHYT_RS29155at 2096.761 kb on + strandat 2097.120 kb on - strand, within BPHYT_RS29160at 2097.208 kb on + strand, within BPHYT_RS29160at 2098.294 kb on + strand, within BPHYT_RS29160at 2098.803 kb on - strandat 2098.812 kb on + strandat 2098.856 kb on - strandat 2098.856 kb on - strandat 2098.874 kb on + strandat 2098.891 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO4 MOI 0.1
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2,095,914 + BPHYT_RS29150 0.40 -1.7
2,096,208 + BPHYT_RS29150 0.86 -0.8
2,096,424 + BPHYT_RS29155 0.17 +0.1
2,096,425 - BPHYT_RS29155 0.18 +0.2
2,096,478 + BPHYT_RS29155 0.33 -1.3
2,096,479 - BPHYT_RS29155 0.33 +0.5
2,096,518 - BPHYT_RS29155 0.44 -0.5
2,096,640 - BPHYT_RS29155 0.79 -0.8
2,096,761 + -1.6
2,097,120 - BPHYT_RS29160 0.21 +0.8
2,097,208 + BPHYT_RS29160 0.26 +0.2
2,098,294 + BPHYT_RS29160 0.90 -0.5
2,098,803 - -0.7
2,098,812 + -0.6
2,098,856 - -0.3
2,098,856 - +0.0
2,098,874 + +0.2
2,098,891 - -0.0

Or see this region's nucleotide sequence