Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19215

Experiment: 24hr PHYTO4 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19210 and BPHYT_RS19215 are separated by 2 nucleotidesBPHYT_RS19215 and BPHYT_RS19220 are separated by 90 nucleotides BPHYT_RS19210: BPHYT_RS19210 - integrase, at 4,312,582 to 4,314,108 _RS19210 BPHYT_RS19215: BPHYT_RS19215 - ATP-binding protein, at 4,314,111 to 4,314,899 _RS19215 BPHYT_RS19220: BPHYT_RS19220 - hypothetical protein, at 4,314,990 to 4,317,170 _RS19220 Position (kb) 4314 4315Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4315.060 kb on - strandat 4315.142 kb on + strandat 4315.143 kb on - strandat 4315.143 kb on - strandat 4315.143 kb on - strandat 4315.233 kb on + strand, within BPHYT_RS19220at 4315.233 kb on + strand, within BPHYT_RS19220at 4315.234 kb on - strand, within BPHYT_RS19220at 4315.234 kb on - strand, within BPHYT_RS19220at 4315.234 kb on - strand, within BPHYT_RS19220at 4315.240 kb on - strand, within BPHYT_RS19220at 4315.240 kb on - strand, within BPHYT_RS19220at 4315.240 kb on - strand, within BPHYT_RS19220at 4315.272 kb on + strand, within BPHYT_RS19220at 4315.272 kb on + strand, within BPHYT_RS19220at 4315.300 kb on + strand, within BPHYT_RS19220at 4315.380 kb on + strand, within BPHYT_RS19220at 4315.475 kb on - strand, within BPHYT_RS19220at 4315.475 kb on - strand, within BPHYT_RS19220at 4315.485 kb on - strand, within BPHYT_RS19220at 4315.485 kb on - strand, within BPHYT_RS19220at 4315.560 kb on + strand, within BPHYT_RS19220at 4315.573 kb on + strand, within BPHYT_RS19220at 4315.573 kb on + strand, within BPHYT_RS19220at 4315.573 kb on + strandat 4315.573 kb on + strand, within BPHYT_RS19220at 4315.573 kb on + strand, within BPHYT_RS19220at 4315.573 kb on + strand, within BPHYT_RS19220at 4315.573 kb on + strand, within BPHYT_RS19220at 4315.573 kb on + strand, within BPHYT_RS19220at 4315.574 kb on - strand, within BPHYT_RS19220at 4315.575 kb on + strand, within BPHYT_RS19220at 4315.575 kb on + strand, within BPHYT_RS19220at 4315.576 kb on - strand, within BPHYT_RS19220at 4315.576 kb on - strand, within BPHYT_RS19220at 4315.618 kb on - strand, within BPHYT_RS19220at 4315.643 kb on - strand, within BPHYT_RS19220at 4315.643 kb on - strand, within BPHYT_RS19220at 4315.646 kb on + strand, within BPHYT_RS19220at 4315.646 kb on + strand, within BPHYT_RS19220at 4315.647 kb on - strand, within BPHYT_RS19220at 4315.740 kb on + strand, within BPHYT_RS19220

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO4 MOI 0.1
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4,315,060 - +0.8
4,315,142 + -1.1
4,315,143 - -0.7
4,315,143 - +0.2
4,315,143 - +1.1
4,315,233 + BPHYT_RS19220 0.11 -0.6
4,315,233 + BPHYT_RS19220 0.11 +0.0
4,315,234 - BPHYT_RS19220 0.11 -0.0
4,315,234 - BPHYT_RS19220 0.11 -0.6
4,315,234 - BPHYT_RS19220 0.11 +2.4
4,315,240 - BPHYT_RS19220 0.11 -0.1
4,315,240 - BPHYT_RS19220 0.11 -0.4
4,315,240 - BPHYT_RS19220 0.11 -2.1
4,315,272 + BPHYT_RS19220 0.13 -0.4
4,315,272 + BPHYT_RS19220 0.13 +1.8
4,315,300 + BPHYT_RS19220 0.14 -1.2
4,315,380 + BPHYT_RS19220 0.18 +0.2
4,315,475 - BPHYT_RS19220 0.22 +0.1
4,315,475 - BPHYT_RS19220 0.22 +0.7
4,315,485 - BPHYT_RS19220 0.23 -1.0
4,315,485 - BPHYT_RS19220 0.23 +0.8
4,315,560 + BPHYT_RS19220 0.26 +0.0
4,315,573 + BPHYT_RS19220 0.27 -0.9
4,315,573 + BPHYT_RS19220 0.27 -2.2
4,315,573 + +0.4
4,315,573 + BPHYT_RS19220 0.27 +3.4
4,315,573 + BPHYT_RS19220 0.27 -0.0
4,315,573 + BPHYT_RS19220 0.27 +0.8
4,315,573 + BPHYT_RS19220 0.27 +0.4
4,315,573 + BPHYT_RS19220 0.27 -1.8
4,315,574 - BPHYT_RS19220 0.27 +0.6
4,315,575 + BPHYT_RS19220 0.27 +0.4
4,315,575 + BPHYT_RS19220 0.27 +0.1
4,315,576 - BPHYT_RS19220 0.27 +1.9
4,315,576 - BPHYT_RS19220 0.27 -0.8
4,315,618 - BPHYT_RS19220 0.29 +0.2
4,315,643 - BPHYT_RS19220 0.30 -0.1
4,315,643 - BPHYT_RS19220 0.30 -0.2
4,315,646 + BPHYT_RS19220 0.30 +2.0
4,315,646 + BPHYT_RS19220 0.30 -0.7
4,315,647 - BPHYT_RS19220 0.30 -1.7
4,315,740 + BPHYT_RS19220 0.34 +0.4

Or see this region's nucleotide sequence