Experiment: 24hr PHYTO4 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02730 and BPHYT_RS02735 overlap by 8 nucleotides BPHYT_RS02735 and BPHYT_RS02740 are separated by 38 nucleotides
BPHYT_RS02730: BPHYT_RS02730 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) <small>(from data)</small>, at 611,479 to 612,582
_RS02730
BPHYT_RS02735: BPHYT_RS02735 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) <small>(from data)</small>, at 612,575 to 613,582
_RS02735
BPHYT_RS02740: BPHYT_RS02740 - N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) <small>(from data)</small>, at 613,621 to 616,185
_RS02740
Position (kb) 612
613
614 Strain fitness (log2 ratio) -2
-1
0
1 at 611.599 kb on + strand, within BPHYT_RS02730 at 611.600 kb on - strand, within BPHYT_RS02730 at 611.845 kb on + strand, within BPHYT_RS02730 at 611.846 kb on - strand, within BPHYT_RS02730 at 611.846 kb on - strand, within BPHYT_RS02730 at 611.917 kb on + strand, within BPHYT_RS02730 at 611.918 kb on - strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.241 kb on + strand, within BPHYT_RS02730 at 612.241 kb on + strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.245 kb on + strand, within BPHYT_RS02730 at 612.246 kb on - strand, within BPHYT_RS02730 at 612.426 kb on - strand, within BPHYT_RS02730 at 612.426 kb on - strand, within BPHYT_RS02730 at 612.458 kb on - strand, within BPHYT_RS02730 at 612.458 kb on - strand, within BPHYT_RS02730 at 612.574 kb on + strand at 612.574 kb on + strand at 612.575 kb on - strand at 612.581 kb on - strand at 613.013 kb on + strand, within BPHYT_RS02735 at 613.013 kb on + strand, within BPHYT_RS02735 at 613.013 kb on + strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.016 kb on - strand at 613.016 kb on - strand, within BPHYT_RS02735 at 613.112 kb on - strand, within BPHYT_RS02735 at 613.432 kb on + strand, within BPHYT_RS02735 at 613.497 kb on - strand at 613.642 kb on - strand at 613.642 kb on - strand at 613.642 kb on - strand at 613.779 kb on + strand at 613.854 kb on + strand at 613.854 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO4 MOI 0.1 remove 611,599 + BPHYT_RS02730 0.11 -0.5 611,600 - BPHYT_RS02730 0.11 -0.3 611,845 + BPHYT_RS02730 0.33 -0.1 611,846 - BPHYT_RS02730 0.33 -0.7 611,846 - BPHYT_RS02730 0.33 -0.7 611,917 + BPHYT_RS02730 0.40 -1.4 611,918 - BPHYT_RS02730 0.40 -1.3 612,040 + BPHYT_RS02730 0.51 +0.2 612,040 + BPHYT_RS02730 0.51 +0.1 612,040 + BPHYT_RS02730 0.51 -0.4 612,040 + BPHYT_RS02730 0.51 +0.8 612,241 + BPHYT_RS02730 0.69 -0.1 612,241 + BPHYT_RS02730 0.69 -0.2 612,242 - BPHYT_RS02730 0.69 -2.1 612,242 - BPHYT_RS02730 0.69 +0.0 612,242 - BPHYT_RS02730 0.69 -1.0 612,245 + BPHYT_RS02730 0.69 +0.1 612,246 - BPHYT_RS02730 0.69 -1.2 612,426 - BPHYT_RS02730 0.86 -0.7 612,426 - BPHYT_RS02730 0.86 -1.9 612,458 - BPHYT_RS02730 0.89 +1.0 612,458 - BPHYT_RS02730 0.89 +0.2 612,574 + -0.3 612,574 + -0.0 612,575 - +0.5 612,581 - +0.0 613,013 + BPHYT_RS02735 0.43 -1.0 613,013 + BPHYT_RS02735 0.43 -1.1 613,013 + BPHYT_RS02735 0.43 -0.1 613,014 - BPHYT_RS02735 0.44 +0.1 613,014 - BPHYT_RS02735 0.44 -0.3 613,014 - BPHYT_RS02735 0.44 -0.4 613,014 - BPHYT_RS02735 0.44 -0.3 613,014 - BPHYT_RS02735 0.44 -0.2 613,014 - BPHYT_RS02735 0.44 -0.6 613,016 - +0.8 613,016 - BPHYT_RS02735 0.44 -0.1 613,112 - BPHYT_RS02735 0.53 -0.6 613,432 + BPHYT_RS02735 0.85 -1.8 613,497 - -0.8 613,642 - +1.6 613,642 - -0.6 613,642 - -0.5 613,779 + +0.2 613,854 + -0.4 613,854 + -0.5
Or see this region's nucleotide sequence