Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35680

Experiment: 24hr PHYTO4 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35675 and BPHYT_RS35680 are separated by 64 nucleotidesBPHYT_RS35680 and BPHYT_RS35685 are separated by 173 nucleotides BPHYT_RS35675: BPHYT_RS35675 - short-chain dehydrogenase, at 3,595,872 to 3,596,645 _RS35675 BPHYT_RS35680: BPHYT_RS35680 - sugar ABC transporter ATP-binding protein, at 3,596,710 to 3,597,792 _RS35680 BPHYT_RS35685: BPHYT_RS35685 - RpiR family transcriptional regulator, at 3,597,966 to 3,598,829 _RS35685 Position (kb) 3596 3597 3598Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3595.722 kb on + strandat 3595.744 kb on - strandat 3596.208 kb on + strand, within BPHYT_RS35675at 3596.209 kb on - strand, within BPHYT_RS35675at 3596.209 kb on - strand, within BPHYT_RS35675at 3596.968 kb on + strand, within BPHYT_RS35680at 3597.751 kb on - strandat 3597.751 kb on - strandat 3597.864 kb on + strandat 3597.865 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO4 MOI 10
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3,595,722 + -0.8
3,595,744 - -0.4
3,596,208 + BPHYT_RS35675 0.43 -1.1
3,596,209 - BPHYT_RS35675 0.44 -1.4
3,596,209 - BPHYT_RS35675 0.44 -1.0
3,596,968 + BPHYT_RS35680 0.24 +0.9
3,597,751 - -3.0
3,597,751 - +2.4
3,597,864 + +0.9
3,597,865 - +0.8

Or see this region's nucleotide sequence