Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31010

Experiment: 24hr PHYTO4 MOI 10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS31005 and BPHYT_RS31010 are separated by 219 nucleotidesBPHYT_RS31010 and BPHYT_RS31015 overlap by 4 nucleotidesBPHYT_RS31015 and BPHYT_RS31020 overlap by 17 nucleotides BPHYT_RS31005: BPHYT_RS31005 - hypothetical protein, at 2,511,073 to 2,512,074 _RS31005 BPHYT_RS31010: BPHYT_RS31010 - arabinose 5-phosphate isomerase, at 2,512,294 to 2,513,229 _RS31010 BPHYT_RS31015: BPHYT_RS31015 - 3-deoxy-manno-octulosonate cytidylyltransferase 2, at 2,513,226 to 2,514,017 _RS31015 BPHYT_RS31020: BPHYT_RS31020 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 2,514,001 to 2,514,555 _RS31020 Position (kb) 2512 2513 2514Strain fitness (log2 ratio) -1 0 1at 2513.214 kb on - strandat 2513.440 kb on + strand, within BPHYT_RS31015at 2513.441 kb on - strand, within BPHYT_RS31015at 2514.048 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO4 MOI 10
remove
2,513,214 - +1.1
2,513,440 + BPHYT_RS31015 0.27 +0.9
2,513,441 - BPHYT_RS31015 0.27 -1.2
2,514,048 - -1.6

Or see this region's nucleotide sequence