Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30410

Experiment: 24hr PHYTO4 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30405 and BPHYT_RS30410 are separated by 552 nucleotidesBPHYT_RS30410 and BPHYT_RS30415 are separated by 545 nucleotides BPHYT_RS30405: BPHYT_RS30405 - hydrolase, at 2,377,847 to 2,378,482 _RS30405 BPHYT_RS30410: BPHYT_RS30410 - chloroperoxidase, at 2,379,035 to 2,379,856 _RS30410 BPHYT_RS30415: BPHYT_RS30415 - AraC family transcriptional regulator, at 2,380,402 to 2,381,319 _RS30415 Position (kb) 2379 2380Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2378.536 kb on + strandat 2378.733 kb on + strandat 2379.034 kb on + strandat 2379.040 kb on + strandat 2379.252 kb on - strand, within BPHYT_RS30410at 2379.344 kb on + strand, within BPHYT_RS30410at 2379.501 kb on - strand, within BPHYT_RS30410at 2379.615 kb on - strand, within BPHYT_RS30410at 2379.907 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO4 MOI 10
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2,378,536 + +0.7
2,378,733 + -1.0
2,379,034 + -0.1
2,379,040 + +0.2
2,379,252 - BPHYT_RS30410 0.26 -0.7
2,379,344 + BPHYT_RS30410 0.38 -1.1
2,379,501 - BPHYT_RS30410 0.57 -3.3
2,379,615 - BPHYT_RS30410 0.71 -0.4
2,379,907 - +1.9

Or see this region's nucleotide sequence