Experiment: 24hr PHYTO4 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22655 and BPHYT_RS22660 are separated by 10 nucleotides BPHYT_RS22660 and BPHYT_RS22665 are separated by 121 nucleotides BPHYT_RS22665 and BPHYT_RS22670 are separated by 157 nucleotides BPHYT_RS22670 and BPHYT_RS22675 are separated by 190 nucleotides
BPHYT_RS22655: BPHYT_RS22655 - AraC family transcriptional regulator, at 640,131 to 640,898
_RS22655
BPHYT_RS22660: BPHYT_RS22660 - hypothetical protein, at 640,909 to 641,238
_RS22660
BPHYT_RS22665: BPHYT_RS22665 - hypothetical protein, at 641,360 to 641,620
_RS22665
BPHYT_RS22670: BPHYT_RS22670 - hypothetical protein, at 641,778 to 642,110
_RS22670
BPHYT_RS22675: BPHYT_RS22675 - 4-hydroxyphenylpyruvate dioxygenase, at 642,301 to 644,184
_RS22675
Position (kb) 641
642
643 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 640.850 kb on + strand at 640.930 kb on + strand at 640.930 kb on + strand at 640.933 kb on + strand at 640.934 kb on - strand at 640.934 kb on - strand at 640.939 kb on + strand at 640.940 kb on - strand at 640.940 kb on - strand at 641.026 kb on + strand, within BPHYT_RS22660 at 641.026 kb on + strand, within BPHYT_RS22660 at 641.027 kb on - strand, within BPHYT_RS22660 at 641.073 kb on + strand, within BPHYT_RS22660 at 641.074 kb on - strand, within BPHYT_RS22660 at 641.098 kb on + strand, within BPHYT_RS22660 at 641.162 kb on - strand, within BPHYT_RS22660 at 641.313 kb on + strand at 641.362 kb on - strand at 641.683 kb on + strand at 641.683 kb on + strand at 641.683 kb on + strand at 641.684 kb on - strand at 641.761 kb on + strand at 641.851 kb on + strand, within BPHYT_RS22670 at 642.110 kb on + strand at 642.111 kb on - strand at 642.203 kb on + strand at 642.423 kb on - strand at 642.462 kb on - strand at 642.472 kb on - strand at 642.533 kb on + strand, within BPHYT_RS22675 at 642.534 kb on - strand, within BPHYT_RS22675 at 642.536 kb on + strand, within BPHYT_RS22675 at 642.644 kb on + strand, within BPHYT_RS22675 at 642.645 kb on - strand, within BPHYT_RS22675 at 642.645 kb on - strand, within BPHYT_RS22675 at 642.645 kb on - strand, within BPHYT_RS22675 at 642.645 kb on - strand, within BPHYT_RS22675 at 642.648 kb on + strand, within BPHYT_RS22675 at 642.648 kb on + strand, within BPHYT_RS22675 at 642.648 kb on + strand, within BPHYT_RS22675 at 642.649 kb on - strand, within BPHYT_RS22675 at 642.753 kb on - strand, within BPHYT_RS22675 at 642.793 kb on + strand, within BPHYT_RS22675
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO4 MOI 10 remove 640,850 + -1.2 640,930 + -0.2 640,930 + +0.2 640,933 + -1.7 640,934 - -0.4 640,934 - -0.7 640,939 + -1.5 640,940 - -0.6 640,940 - +0.5 641,026 + BPHYT_RS22660 0.35 -0.2 641,026 + BPHYT_RS22660 0.35 +0.3 641,027 - BPHYT_RS22660 0.36 -1.1 641,073 + BPHYT_RS22660 0.50 +0.0 641,074 - BPHYT_RS22660 0.50 -2.4 641,098 + BPHYT_RS22660 0.57 +0.3 641,162 - BPHYT_RS22660 0.77 +1.0 641,313 + +1.1 641,362 - -0.7 641,683 + +1.2 641,683 + -0.7 641,683 + -0.5 641,684 - +0.8 641,761 + -0.3 641,851 + BPHYT_RS22670 0.22 +1.9 642,110 + -3.2 642,111 - +1.0 642,203 + -0.3 642,423 - -2.2 642,462 - -0.8 642,472 - -1.6 642,533 + BPHYT_RS22675 0.12 +1.5 642,534 - BPHYT_RS22675 0.12 +0.1 642,536 + BPHYT_RS22675 0.12 +0.1 642,644 + BPHYT_RS22675 0.18 -1.6 642,645 - BPHYT_RS22675 0.18 +0.4 642,645 - BPHYT_RS22675 0.18 -1.3 642,645 - BPHYT_RS22675 0.18 +3.4 642,645 - BPHYT_RS22675 0.18 +1.0 642,648 + BPHYT_RS22675 0.18 -0.5 642,648 + BPHYT_RS22675 0.18 +1.5 642,648 + BPHYT_RS22675 0.18 +0.3 642,649 - BPHYT_RS22675 0.18 -0.6 642,753 - BPHYT_RS22675 0.24 +0.8 642,793 + BPHYT_RS22675 0.26 -0.1
Or see this region's nucleotide sequence