Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19050

Experiment: 24hr PHYTO4 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19045 and BPHYT_RS19050 are separated by 286 nucleotidesBPHYT_RS19050 and BPHYT_RS19055 are separated by 163 nucleotides BPHYT_RS19045: BPHYT_RS19045 - hypothetical protein, at 4,275,382 to 4,276,077 _RS19045 BPHYT_RS19050: BPHYT_RS19050 - hypothetical protein, at 4,276,364 to 4,276,675 _RS19050 BPHYT_RS19055: BPHYT_RS19055 - COF family hydrolase, at 4,276,839 to 4,277,660 _RS19055 Position (kb) 4276 4277Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4275.381 kb on + strandat 4275.381 kb on + strandat 4275.619 kb on + strand, within BPHYT_RS19045at 4275.619 kb on + strand, within BPHYT_RS19045at 4275.619 kb on + strand, within BPHYT_RS19045at 4275.619 kb on + strand, within BPHYT_RS19045at 4275.620 kb on - strand, within BPHYT_RS19045at 4275.620 kb on - strand, within BPHYT_RS19045at 4275.620 kb on - strand, within BPHYT_RS19045at 4275.665 kb on - strand, within BPHYT_RS19045at 4275.665 kb on - strand, within BPHYT_RS19045at 4275.667 kb on + strand, within BPHYT_RS19045at 4275.667 kb on + strand, within BPHYT_RS19045at 4275.667 kb on + strand, within BPHYT_RS19045at 4275.668 kb on - strand, within BPHYT_RS19045at 4275.668 kb on - strand, within BPHYT_RS19045at 4275.668 kb on - strand, within BPHYT_RS19045at 4275.670 kb on + strand, within BPHYT_RS19045at 4275.670 kb on + strand, within BPHYT_RS19045at 4275.670 kb on + strand, within BPHYT_RS19045at 4275.670 kb on + strand, within BPHYT_RS19045at 4275.670 kb on + strand, within BPHYT_RS19045at 4275.671 kb on - strand, within BPHYT_RS19045at 4275.671 kb on - strand, within BPHYT_RS19045at 4275.671 kb on - strand, within BPHYT_RS19045at 4275.671 kb on - strand, within BPHYT_RS19045at 4275.671 kb on - strand, within BPHYT_RS19045at 4275.840 kb on - strand, within BPHYT_RS19045at 4275.840 kb on - strand, within BPHYT_RS19045at 4275.840 kb on - strand, within BPHYT_RS19045at 4275.840 kb on - strand, within BPHYT_RS19045at 4275.915 kb on + strand, within BPHYT_RS19045at 4275.916 kb on - strand, within BPHYT_RS19045at 4275.916 kb on - strand, within BPHYT_RS19045at 4275.919 kb on + strand, within BPHYT_RS19045at 4275.919 kb on + strand, within BPHYT_RS19045at 4275.919 kb on + strand, within BPHYT_RS19045at 4275.919 kb on + strand, within BPHYT_RS19045at 4275.919 kb on + strand, within BPHYT_RS19045at 4275.919 kb on + strand, within BPHYT_RS19045at 4275.919 kb on + strand, within BPHYT_RS19045at 4275.920 kb on - strand, within BPHYT_RS19045at 4275.920 kb on - strand, within BPHYT_RS19045at 4275.920 kb on - strand, within BPHYT_RS19045at 4275.920 kb on - strand, within BPHYT_RS19045at 4275.920 kb on - strand, within BPHYT_RS19045at 4276.083 kb on + strandat 4276.086 kb on + strandat 4276.086 kb on + strandat 4276.086 kb on + strandat 4276.087 kb on - strandat 4276.094 kb on + strandat 4276.106 kb on - strandat 4276.228 kb on + strandat 4276.229 kb on - strandat 4276.229 kb on - strandat 4276.232 kb on + strandat 4276.232 kb on + strandat 4276.232 kb on + strandat 4276.232 kb on + strandat 4276.232 kb on + strandat 4276.233 kb on - strandat 4276.233 kb on - strandat 4276.233 kb on - strandat 4276.233 kb on - strandat 4276.279 kb on + strandat 4276.279 kb on + strandat 4276.339 kb on + strandat 4276.339 kb on + strandat 4276.339 kb on + strandat 4276.339 kb on + strandat 4276.339 kb on + strandat 4276.339 kb on + strandat 4276.340 kb on - strandat 4276.340 kb on - strandat 4276.340 kb on - strandat 4276.340 kb on - strandat 4276.364 kb on - strandat 4276.438 kb on + strand, within BPHYT_RS19050at 4276.478 kb on + strand, within BPHYT_RS19050at 4276.479 kb on - strand, within BPHYT_RS19050at 4276.479 kb on - strand, within BPHYT_RS19050at 4276.520 kb on + strand, within BPHYT_RS19050at 4276.521 kb on - strand, within BPHYT_RS19050at 4276.524 kb on - strand, within BPHYT_RS19050at 4276.565 kb on + strand, within BPHYT_RS19050at 4276.586 kb on + strand, within BPHYT_RS19050at 4276.630 kb on + strand, within BPHYT_RS19050at 4276.692 kb on - strandat 4277.091 kb on + strand, within BPHYT_RS19055at 4277.091 kb on + strand, within BPHYT_RS19055at 4277.091 kb on + strand, within BPHYT_RS19055at 4277.131 kb on + strand, within BPHYT_RS19055at 4277.131 kb on + strand, within BPHYT_RS19055at 4277.132 kb on - strand, within BPHYT_RS19055at 4277.132 kb on - strand, within BPHYT_RS19055at 4277.136 kb on + strand, within BPHYT_RS19055at 4277.136 kb on + strand, within BPHYT_RS19055at 4277.136 kb on + strand, within BPHYT_RS19055at 4277.137 kb on - strand, within BPHYT_RS19055at 4277.140 kb on + strand, within BPHYT_RS19055at 4277.140 kb on + strand, within BPHYT_RS19055at 4277.140 kb on + strand, within BPHYT_RS19055at 4277.140 kb on + strand, within BPHYT_RS19055at 4277.141 kb on - strand, within BPHYT_RS19055at 4277.141 kb on - strand, within BPHYT_RS19055at 4277.141 kb on - strand, within BPHYT_RS19055at 4277.141 kb on - strand, within BPHYT_RS19055at 4277.143 kb on - strand, within BPHYT_RS19055at 4277.143 kb on - strand, within BPHYT_RS19055at 4277.210 kb on - strand, within BPHYT_RS19055at 4277.210 kb on - strand, within BPHYT_RS19055at 4277.263 kb on + strand, within BPHYT_RS19055at 4277.264 kb on - strand, within BPHYT_RS19055at 4277.264 kb on - strand, within BPHYT_RS19055at 4277.385 kb on + strand, within BPHYT_RS19055at 4277.385 kb on + strand, within BPHYT_RS19055at 4277.386 kb on - strand, within BPHYT_RS19055at 4277.386 kb on - strand, within BPHYT_RS19055at 4277.472 kb on - strand, within BPHYT_RS19055at 4277.472 kb on - strand, within BPHYT_RS19055at 4277.479 kb on + strand, within BPHYT_RS19055at 4277.525 kb on - strand, within BPHYT_RS19055at 4277.656 kb on + strandat 4277.656 kb on + strandat 4277.656 kb on + strandat 4277.657 kb on - strandat 4277.657 kb on - strandat 4277.657 kb on - strandat 4277.660 kb on + strandat 4277.660 kb on + strandat 4277.660 kb on + strandat 4277.661 kb on - strandat 4277.661 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO4 MOI 10
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4,275,381 + -1.2
4,275,381 + -1.0
4,275,619 + BPHYT_RS19045 0.34 -1.0
4,275,619 + BPHYT_RS19045 0.34 +0.3
4,275,619 + BPHYT_RS19045 0.34 -1.2
4,275,619 + BPHYT_RS19045 0.34 -0.9
4,275,620 - BPHYT_RS19045 0.34 +0.4
4,275,620 - BPHYT_RS19045 0.34 -0.0
4,275,620 - BPHYT_RS19045 0.34 +0.5
4,275,665 - BPHYT_RS19045 0.41 -0.9
4,275,665 - BPHYT_RS19045 0.41 +0.2
4,275,667 + BPHYT_RS19045 0.41 +0.4
4,275,667 + BPHYT_RS19045 0.41 -0.1
4,275,667 + BPHYT_RS19045 0.41 +0.4
4,275,668 - BPHYT_RS19045 0.41 -2.3
4,275,668 - BPHYT_RS19045 0.41 +0.3
4,275,668 - BPHYT_RS19045 0.41 -0.6
4,275,670 + BPHYT_RS19045 0.41 +0.1
4,275,670 + BPHYT_RS19045 0.41 -0.6
4,275,670 + BPHYT_RS19045 0.41 -2.8
4,275,670 + BPHYT_RS19045 0.41 -0.2
4,275,670 + BPHYT_RS19045 0.41 +0.8
4,275,671 - BPHYT_RS19045 0.42 +0.1
4,275,671 - BPHYT_RS19045 0.42 +1.6
4,275,671 - BPHYT_RS19045 0.42 +1.7
4,275,671 - BPHYT_RS19045 0.42 -0.9
4,275,671 - BPHYT_RS19045 0.42 -0.5
4,275,840 - BPHYT_RS19045 0.66 +0.1
4,275,840 - BPHYT_RS19045 0.66 -0.1
4,275,840 - BPHYT_RS19045 0.66 +0.2
4,275,840 - BPHYT_RS19045 0.66 -0.3
4,275,915 + BPHYT_RS19045 0.77 +1.1
4,275,916 - BPHYT_RS19045 0.77 +0.4
4,275,916 - BPHYT_RS19045 0.77 -1.5
4,275,919 + BPHYT_RS19045 0.77 +0.5
4,275,919 + BPHYT_RS19045 0.77 +1.4
4,275,919 + BPHYT_RS19045 0.77 -2.6
4,275,919 + BPHYT_RS19045 0.77 -0.8
4,275,919 + BPHYT_RS19045 0.77 +0.7
4,275,919 + BPHYT_RS19045 0.77 +0.0
4,275,919 + BPHYT_RS19045 0.77 +0.1
4,275,920 - BPHYT_RS19045 0.77 -0.7
4,275,920 - BPHYT_RS19045 0.77 -1.0
4,275,920 - BPHYT_RS19045 0.77 +0.6
4,275,920 - BPHYT_RS19045 0.77 +0.6
4,275,920 - BPHYT_RS19045 0.77 +0.7
4,276,083 + -0.5
4,276,086 + +0.3
4,276,086 + +1.7
4,276,086 + -1.4
4,276,087 - -0.1
4,276,094 + +0.0
4,276,106 - +0.8
4,276,228 + -0.1
4,276,229 - +0.9
4,276,229 - -0.7
4,276,232 + +0.8
4,276,232 + +0.8
4,276,232 + +0.5
4,276,232 + -0.1
4,276,232 + -0.5
4,276,233 - -0.4
4,276,233 - -0.8
4,276,233 - +1.5
4,276,233 - +0.5
4,276,279 + -0.1
4,276,279 + -0.8
4,276,339 + +1.1
4,276,339 + -0.1
4,276,339 + -0.3
4,276,339 + -0.8
4,276,339 + -1.4
4,276,339 + -1.2
4,276,340 - -3.2
4,276,340 - -0.3
4,276,340 - +1.1
4,276,340 - -0.9
4,276,364 - +5.0
4,276,438 + BPHYT_RS19050 0.24 +0.7
4,276,478 + BPHYT_RS19050 0.37 +0.4
4,276,479 - BPHYT_RS19050 0.37 -1.2
4,276,479 - BPHYT_RS19050 0.37 +0.3
4,276,520 + BPHYT_RS19050 0.50 -3.2
4,276,521 - BPHYT_RS19050 0.50 +0.3
4,276,524 - BPHYT_RS19050 0.51 +0.1
4,276,565 + BPHYT_RS19050 0.64 -0.1
4,276,586 + BPHYT_RS19050 0.71 -0.9
4,276,630 + BPHYT_RS19050 0.85 +0.5
4,276,692 - +0.3
4,277,091 + BPHYT_RS19055 0.31 -1.2
4,277,091 + BPHYT_RS19055 0.31 +0.5
4,277,091 + BPHYT_RS19055 0.31 +0.3
4,277,131 + BPHYT_RS19055 0.36 -3.0
4,277,131 + BPHYT_RS19055 0.36 +0.3
4,277,132 - BPHYT_RS19055 0.36 -0.3
4,277,132 - BPHYT_RS19055 0.36 -2.1
4,277,136 + BPHYT_RS19055 0.36 -0.1
4,277,136 + BPHYT_RS19055 0.36 +1.0
4,277,136 + BPHYT_RS19055 0.36 +0.2
4,277,137 - BPHYT_RS19055 0.36 +1.4
4,277,140 + BPHYT_RS19055 0.37 +0.1
4,277,140 + BPHYT_RS19055 0.37 -1.9
4,277,140 + BPHYT_RS19055 0.37 -0.5
4,277,140 + BPHYT_RS19055 0.37 +0.7
4,277,141 - BPHYT_RS19055 0.37 +0.1
4,277,141 - BPHYT_RS19055 0.37 +1.8
4,277,141 - BPHYT_RS19055 0.37 -1.4
4,277,141 - BPHYT_RS19055 0.37 +0.7
4,277,143 - BPHYT_RS19055 0.37 +1.1
4,277,143 - BPHYT_RS19055 0.37 +0.4
4,277,210 - BPHYT_RS19055 0.45 -1.4
4,277,210 - BPHYT_RS19055 0.45 -2.2
4,277,263 + BPHYT_RS19055 0.52 +0.3
4,277,264 - BPHYT_RS19055 0.52 -0.0
4,277,264 - BPHYT_RS19055 0.52 +2.7
4,277,385 + BPHYT_RS19055 0.66 +0.1
4,277,385 + BPHYT_RS19055 0.66 -0.1
4,277,386 - BPHYT_RS19055 0.67 -1.4
4,277,386 - BPHYT_RS19055 0.67 +0.3
4,277,472 - BPHYT_RS19055 0.77 -0.1
4,277,472 - BPHYT_RS19055 0.77 +0.6
4,277,479 + BPHYT_RS19055 0.78 +1.1
4,277,525 - BPHYT_RS19055 0.83 +0.4
4,277,656 + -0.9
4,277,656 + +0.7
4,277,656 + -0.1
4,277,657 - +0.4
4,277,657 - +1.3
4,277,657 - -1.9
4,277,660 + -0.5
4,277,660 + +0.2
4,277,660 + -0.5
4,277,661 - -0.3
4,277,661 - -0.5

Or see this region's nucleotide sequence