Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11940

Experiment: 24hr PHYTO4 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11935 and BPHYT_RS11940 are separated by 241 nucleotidesBPHYT_RS11940 and BPHYT_RS11945 are separated by 111 nucleotides BPHYT_RS11935: BPHYT_RS11935 - acetoacetate decarboxylase, at 2,714,685 to 2,715,464 _RS11935 BPHYT_RS11940: BPHYT_RS11940 - hypothetical protein, at 2,715,706 to 2,716,509 _RS11940 BPHYT_RS11945: BPHYT_RS11945 - multidrug transporter, at 2,716,621 to 2,717,628 _RS11945 Position (kb) 2715 2716 2717Strain fitness (log2 ratio) -2 -1 0 1 2at 2714.728 kb on + strandat 2716.066 kb on + strand, within BPHYT_RS11940at 2716.936 kb on - strandat 2717.037 kb on - strand, within BPHYT_RS11945at 2717.220 kb on - strand, within BPHYT_RS11945at 2717.357 kb on - strand, within BPHYT_RS11945at 2717.454 kb on + strand, within BPHYT_RS11945at 2717.455 kb on - strand, within BPHYT_RS11945

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO4 MOI 10
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2,714,728 + +1.3
2,716,066 + BPHYT_RS11940 0.45 -2.2
2,716,936 - +2.7
2,717,037 - BPHYT_RS11945 0.41 -0.8
2,717,220 - BPHYT_RS11945 0.59 +0.2
2,717,357 - BPHYT_RS11945 0.73 -0.0
2,717,454 + BPHYT_RS11945 0.83 +0.5
2,717,455 - BPHYT_RS11945 0.83 +0.7

Or see this region's nucleotide sequence