Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08370

Experiment: 24hr PHYTO4 MOI 10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS08365 and BPHYT_RS08370 are separated by 502 nucleotidesBPHYT_RS08370 and BPHYT_RS08375 are separated by 42 nucleotides BPHYT_RS08365: BPHYT_RS08365 - 3-oxoacyl-ACP reductase, at 1,916,538 to 1,917,248 _RS08365 BPHYT_RS08370: BPHYT_RS08370 - glyoxalase, at 1,917,751 to 1,918,362 _RS08370 BPHYT_RS08375: BPHYT_RS08375 - enoyl-CoA hydratase, at 1,918,405 to 1,919,268 _RS08375 Position (kb) 1917 1918 1919Strain fitness (log2 ratio) -1 0 1at 1917.161 kb on - strand, within BPHYT_RS08365at 1917.575 kb on - strandat 1917.641 kb on - strandat 1918.105 kb on + strand, within BPHYT_RS08370

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO4 MOI 10
remove
1,917,161 - BPHYT_RS08365 0.88 -0.3
1,917,575 - -0.9
1,917,641 - +0.7
1,918,105 + BPHYT_RS08370 0.58 -0.8

Or see this region's nucleotide sequence