Experiment: 24hr PHYTO4 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03450 and BPHYT_RS03455 are separated by 7 nucleotides BPHYT_RS03455 and BPHYT_RS03460 overlap by 8 nucleotides BPHYT_RS03460 and BPHYT_RS03465 overlap by 4 nucleotides
BPHYT_RS03450: BPHYT_RS03450 - paraquat-inducible protein A, at 777,801 to 778,586
_RS03450
BPHYT_RS03455: BPHYT_RS03455 - paraquat-inducible protein A, at 778,594 to 779,256
_RS03455
BPHYT_RS03460: BPHYT_RS03460 - mammalian cell entry protein, at 779,249 to 780,907
_RS03460
BPHYT_RS03465: BPHYT_RS03465 - hypothetical protein, at 780,904 to 781,650
_RS03465
Position (kb) 779
780
781 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 778.273 kb on + strand, within BPHYT_RS03450 at 778.274 kb on - strand, within BPHYT_RS03450 at 778.600 kb on + strand at 778.601 kb on - strand at 778.601 kb on - strand at 778.775 kb on - strand, within BPHYT_RS03455 at 778.776 kb on + strand, within BPHYT_RS03455 at 778.777 kb on - strand, within BPHYT_RS03455 at 778.859 kb on - strand, within BPHYT_RS03455 at 779.201 kb on + strand at 779.201 kb on + strand at 779.202 kb on - strand at 779.202 kb on - strand at 779.224 kb on - strand at 779.254 kb on + strand at 779.510 kb on + strand, within BPHYT_RS03460 at 779.511 kb on - strand, within BPHYT_RS03460 at 779.677 kb on + strand, within BPHYT_RS03460 at 779.678 kb on - strand, within BPHYT_RS03460 at 779.699 kb on + strand, within BPHYT_RS03460 at 779.699 kb on + strand, within BPHYT_RS03460 at 779.699 kb on + strand, within BPHYT_RS03460 at 779.770 kb on + strand, within BPHYT_RS03460 at 779.770 kb on + strand, within BPHYT_RS03460 at 779.770 kb on + strand, within BPHYT_RS03460 at 779.770 kb on + strand, within BPHYT_RS03460 at 780.285 kb on - strand, within BPHYT_RS03460 at 780.473 kb on + strand, within BPHYT_RS03460 at 780.473 kb on + strand, within BPHYT_RS03460 at 780.474 kb on - strand, within BPHYT_RS03460 at 780.487 kb on + strand, within BPHYT_RS03460 at 781.022 kb on - strand, within BPHYT_RS03465 at 781.023 kb on + strand, within BPHYT_RS03465 at 781.038 kb on + strand, within BPHYT_RS03465 at 781.276 kb on + strand, within BPHYT_RS03465 at 781.276 kb on + strand, within BPHYT_RS03465 at 781.309 kb on + strand, within BPHYT_RS03465 at 781.309 kb on + strand, within BPHYT_RS03465 at 781.309 kb on + strand, within BPHYT_RS03465 at 781.443 kb on + strand, within BPHYT_RS03465 at 781.528 kb on - strand, within BPHYT_RS03465 at 781.707 kb on - strand at 781.890 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO4 MOI 10 remove 778,273 + BPHYT_RS03450 0.60 -0.1 778,274 - BPHYT_RS03450 0.60 +1.9 778,600 + +0.6 778,601 - +1.0 778,601 - +4.8 778,775 - BPHYT_RS03455 0.27 +4.2 778,776 + BPHYT_RS03455 0.27 +1.8 778,777 - BPHYT_RS03455 0.28 +2.8 778,859 - BPHYT_RS03455 0.40 -1.6 779,201 + +0.3 779,201 + +1.1 779,202 - +0.6 779,202 - +0.6 779,224 - +0.8 779,254 + +1.7 779,510 + BPHYT_RS03460 0.16 +3.5 779,511 - BPHYT_RS03460 0.16 +0.4 779,677 + BPHYT_RS03460 0.26 +0.4 779,678 - BPHYT_RS03460 0.26 +1.1 779,699 + BPHYT_RS03460 0.27 +1.5 779,699 + BPHYT_RS03460 0.27 +0.8 779,699 + BPHYT_RS03460 0.27 +0.3 779,770 + BPHYT_RS03460 0.31 +1.0 779,770 + BPHYT_RS03460 0.31 +1.7 779,770 + BPHYT_RS03460 0.31 +0.8 779,770 + BPHYT_RS03460 0.31 -0.0 780,285 - BPHYT_RS03460 0.62 +1.7 780,473 + BPHYT_RS03460 0.74 +2.0 780,473 + BPHYT_RS03460 0.74 -0.2 780,474 - BPHYT_RS03460 0.74 +1.7 780,487 + BPHYT_RS03460 0.75 +0.3 781,022 - BPHYT_RS03465 0.16 +1.4 781,023 + BPHYT_RS03465 0.16 +1.0 781,038 + BPHYT_RS03465 0.18 +2.4 781,276 + BPHYT_RS03465 0.50 +1.3 781,276 + BPHYT_RS03465 0.50 +0.7 781,309 + BPHYT_RS03465 0.54 -0.8 781,309 + BPHYT_RS03465 0.54 +2.0 781,309 + BPHYT_RS03465 0.54 +1.6 781,443 + BPHYT_RS03465 0.72 +0.7 781,528 - BPHYT_RS03465 0.84 -0.2 781,707 - -1.6 781,890 + -0.0
Or see this region's nucleotide sequence