Experiment: 24hr PHYTO4 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01705 and BPHYT_RS01710 are separated by 241 nucleotides BPHYT_RS01710 and BPHYT_RS01715 overlap by 4 nucleotides
BPHYT_RS01705: BPHYT_RS01705 - MFS transporter, at 385,109 to 386,311
_RS01705
BPHYT_RS01710: BPHYT_RS01710 - RND transporter, at 386,553 to 388,082
_RS01710
BPHYT_RS01715: BPHYT_RS01715 - RND transporter, at 388,079 to 389,284
_RS01715
Position (kb) 386
387
388
389 Strain fitness (log2 ratio) -2
-1
0
1 at 385.560 kb on + strand, within BPHYT_RS01705 at 385.560 kb on + strand, within BPHYT_RS01705 at 385.561 kb on - strand, within BPHYT_RS01705 at 385.561 kb on - strand, within BPHYT_RS01705 at 385.590 kb on + strand, within BPHYT_RS01705 at 385.590 kb on + strand, within BPHYT_RS01705 at 385.590 kb on + strand, within BPHYT_RS01705 at 385.596 kb on + strand, within BPHYT_RS01705 at 385.597 kb on - strand, within BPHYT_RS01705 at 385.929 kb on + strand, within BPHYT_RS01705 at 385.929 kb on + strand, within BPHYT_RS01705 at 385.929 kb on + strand, within BPHYT_RS01705 at 385.930 kb on - strand, within BPHYT_RS01705 at 386.048 kb on - strand, within BPHYT_RS01705 at 386.048 kb on - strand, within BPHYT_RS01705 at 386.215 kb on - strand at 386.356 kb on + strand at 386.357 kb on - strand at 386.448 kb on + strand at 386.448 kb on + strand at 386.555 kb on - strand at 386.769 kb on - strand, within BPHYT_RS01710 at 387.043 kb on + strand, within BPHYT_RS01710 at 387.043 kb on + strand, within BPHYT_RS01710 at 387.043 kb on + strand, within BPHYT_RS01710 at 387.043 kb on + strand, within BPHYT_RS01710 at 387.044 kb on - strand, within BPHYT_RS01710 at 387.044 kb on - strand, within BPHYT_RS01710 at 387.392 kb on - strand, within BPHYT_RS01710 at 387.424 kb on + strand, within BPHYT_RS01710 at 387.925 kb on + strand, within BPHYT_RS01710 at 387.925 kb on + strand, within BPHYT_RS01710 at 387.925 kb on + strand, within BPHYT_RS01710 at 387.926 kb on - strand, within BPHYT_RS01710 at 387.926 kb on - strand, within BPHYT_RS01710 at 387.926 kb on - strand, within BPHYT_RS01710 at 387.958 kb on + strand at 387.959 kb on - strand at 388.206 kb on - strand, within BPHYT_RS01715 at 388.206 kb on - strand, within BPHYT_RS01715 at 388.415 kb on + strand, within BPHYT_RS01715 at 388.416 kb on - strand, within BPHYT_RS01715 at 388.563 kb on + strand, within BPHYT_RS01715 at 388.689 kb on + strand, within BPHYT_RS01715 at 388.690 kb on - strand, within BPHYT_RS01715 at 388.690 kb on - strand, within BPHYT_RS01715
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO4 MOI 10 remove 385,560 + BPHYT_RS01705 0.37 +1.1 385,560 + BPHYT_RS01705 0.37 -0.6 385,561 - BPHYT_RS01705 0.38 +0.0 385,561 - BPHYT_RS01705 0.38 -0.6 385,590 + BPHYT_RS01705 0.40 +0.4 385,590 + BPHYT_RS01705 0.40 +0.1 385,590 + BPHYT_RS01705 0.40 -1.2 385,596 + BPHYT_RS01705 0.40 -1.6 385,597 - BPHYT_RS01705 0.41 -0.3 385,929 + BPHYT_RS01705 0.68 +0.2 385,929 + BPHYT_RS01705 0.68 +0.0 385,929 + BPHYT_RS01705 0.68 +0.2 385,930 - BPHYT_RS01705 0.68 -0.7 386,048 - BPHYT_RS01705 0.78 -2.5 386,048 - BPHYT_RS01705 0.78 -0.5 386,215 - -0.8 386,356 + +0.2 386,357 - +0.3 386,448 + -0.8 386,448 + -0.5 386,555 - -0.4 386,769 - BPHYT_RS01710 0.14 -1.1 387,043 + BPHYT_RS01710 0.32 -0.9 387,043 + BPHYT_RS01710 0.32 +1.1 387,043 + BPHYT_RS01710 0.32 +0.5 387,043 + BPHYT_RS01710 0.32 +0.3 387,044 - BPHYT_RS01710 0.32 -0.6 387,044 - BPHYT_RS01710 0.32 +0.0 387,392 - BPHYT_RS01710 0.55 -1.0 387,424 + BPHYT_RS01710 0.57 -0.4 387,925 + BPHYT_RS01710 0.90 -1.1 387,925 + BPHYT_RS01710 0.90 +0.5 387,925 + BPHYT_RS01710 0.90 -0.0 387,926 - BPHYT_RS01710 0.90 +0.4 387,926 - BPHYT_RS01710 0.90 -0.8 387,926 - BPHYT_RS01710 0.90 -0.6 387,958 + -0.2 387,959 - -0.5 388,206 - BPHYT_RS01715 0.11 -1.2 388,206 - BPHYT_RS01715 0.11 -0.5 388,415 + BPHYT_RS01715 0.28 +1.3 388,416 - BPHYT_RS01715 0.28 -0.0 388,563 + BPHYT_RS01715 0.40 -0.8 388,689 + BPHYT_RS01715 0.51 -1.0 388,690 - BPHYT_RS01715 0.51 -1.2 388,690 - BPHYT_RS01715 0.51 +0.5
Or see this region's nucleotide sequence