Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07150

Experiment: 24hr PHYTO3 MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS07145 and BPHYT_RS07150 are separated by 304 nucleotidesBPHYT_RS07150 and BPHYT_RS07155 are separated by 282 nucleotides BPHYT_RS07145: BPHYT_RS07145 - DNA-binding protein, at 1,619,642 to 1,620,217 _RS07145 BPHYT_RS07150: BPHYT_RS07150 - TonB-dependent receptor, at 1,620,522 to 1,623,266 _RS07150 BPHYT_RS07155: BPHYT_RS07155 - peptide ABC transporter substrate-binding protein, at 1,623,549 to 1,625,504 _RS07155 Position (kb) 1620 1621 1622 1623 1624Strain fitness (log2 ratio) -2 -1 0 1at 1619.684 kb on - strandat 1620.105 kb on + strand, within BPHYT_RS07145at 1621.117 kb on - strand, within BPHYT_RS07150at 1621.411 kb on - strand, within BPHYT_RS07150at 1621.767 kb on - strand, within BPHYT_RS07150at 1622.170 kb on - strand, within BPHYT_RS07150at 1622.172 kb on - strand, within BPHYT_RS07150at 1622.187 kb on - strand, within BPHYT_RS07150at 1622.388 kb on + strand, within BPHYT_RS07150at 1622.802 kb on + strand, within BPHYT_RS07150at 1623.124 kb on - strandat 1623.366 kb on - strandat 1624.051 kb on - strand, within BPHYT_RS07155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 0.1
remove
1,619,684 - -1.8
1,620,105 + BPHYT_RS07145 0.80 +1.1
1,621,117 - BPHYT_RS07150 0.22 -0.3
1,621,411 - BPHYT_RS07150 0.32 -1.0
1,621,767 - BPHYT_RS07150 0.45 -2.1
1,622,170 - BPHYT_RS07150 0.60 +0.8
1,622,172 - BPHYT_RS07150 0.60 -0.0
1,622,187 - BPHYT_RS07150 0.61 +0.1
1,622,388 + BPHYT_RS07150 0.68 -1.0
1,622,802 + BPHYT_RS07150 0.83 -0.4
1,623,124 - -0.2
1,623,366 - -0.3
1,624,051 - BPHYT_RS07155 0.26 -1.4

Or see this region's nucleotide sequence