Experiment: 24hr PHYTO3 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06195 and BPHYT_RS06200 are separated by 5 nucleotides BPHYT_RS06200 and BPHYT_RS06205 are separated by 15 nucleotides BPHYT_RS06205 and BPHYT_RS06210 are separated by 85 nucleotides
BPHYT_RS06195: BPHYT_RS06195 - membrane protein, at 1,414,038 to 1,415,384
_RS06195
BPHYT_RS06200: BPHYT_RS06200 - glycosyl transferase, at 1,415,390 to 1,416,649
_RS06200
BPHYT_RS06205: BPHYT_RS06205 - hypothetical protein, at 1,416,665 to 1,416,985
_RS06205
BPHYT_RS06210: BPHYT_RS06210 - hypothetical protein, at 1,417,071 to 1,417,619
_RS06210
Position (kb) 1415
1416
1417 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1414.833 kb on + strand, within BPHYT_RS06195 at 1415.052 kb on - strand, within BPHYT_RS06195 at 1415.264 kb on - strand at 1415.452 kb on + strand at 1415.614 kb on - strand at 1415.636 kb on + strand, within BPHYT_RS06200 at 1415.636 kb on + strand, within BPHYT_RS06200 at 1415.636 kb on + strand, within BPHYT_RS06200 at 1415.636 kb on + strand, within BPHYT_RS06200 at 1415.636 kb on + strand, within BPHYT_RS06200 at 1415.637 kb on - strand, within BPHYT_RS06200 at 1415.688 kb on + strand, within BPHYT_RS06200 at 1415.740 kb on + strand, within BPHYT_RS06200 at 1415.883 kb on - strand, within BPHYT_RS06200 at 1415.915 kb on + strand, within BPHYT_RS06200 at 1416.140 kb on + strand, within BPHYT_RS06200 at 1416.290 kb on + strand, within BPHYT_RS06200 at 1416.291 kb on - strand, within BPHYT_RS06200 at 1416.750 kb on + strand, within BPHYT_RS06205 at 1416.751 kb on - strand, within BPHYT_RS06205 at 1416.751 kb on - strand, within BPHYT_RS06205 at 1416.858 kb on + strand, within BPHYT_RS06205 at 1416.858 kb on + strand, within BPHYT_RS06205 at 1416.858 kb on + strand, within BPHYT_RS06205 at 1416.859 kb on - strand, within BPHYT_RS06205 at 1416.859 kb on - strand, within BPHYT_RS06205 at 1416.859 kb on - strand, within BPHYT_RS06205 at 1416.864 kb on + strand, within BPHYT_RS06205 at 1417.065 kb on - strand at 1417.159 kb on + strand, within BPHYT_RS06210 at 1417.465 kb on - strand, within BPHYT_RS06210 at 1417.584 kb on - strand at 1417.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 0.1 remove 1,414,833 + BPHYT_RS06195 0.59 +0.0 1,415,052 - BPHYT_RS06195 0.75 +2.4 1,415,264 - +2.4 1,415,452 + -0.8 1,415,614 - +0.4 1,415,636 + BPHYT_RS06200 0.20 -1.4 1,415,636 + BPHYT_RS06200 0.20 -0.7 1,415,636 + BPHYT_RS06200 0.20 -2.1 1,415,636 + BPHYT_RS06200 0.20 -1.0 1,415,636 + BPHYT_RS06200 0.20 -1.3 1,415,637 - BPHYT_RS06200 0.20 -0.8 1,415,688 + BPHYT_RS06200 0.24 -1.4 1,415,740 + BPHYT_RS06200 0.28 -0.3 1,415,883 - BPHYT_RS06200 0.39 +3.4 1,415,915 + BPHYT_RS06200 0.42 -1.4 1,416,140 + BPHYT_RS06200 0.60 +0.4 1,416,290 + BPHYT_RS06200 0.71 -0.5 1,416,291 - BPHYT_RS06200 0.72 -1.4 1,416,750 + BPHYT_RS06205 0.26 +0.1 1,416,751 - BPHYT_RS06205 0.27 +0.9 1,416,751 - BPHYT_RS06205 0.27 -0.3 1,416,858 + BPHYT_RS06205 0.60 -1.1 1,416,858 + BPHYT_RS06205 0.60 +1.6 1,416,858 + BPHYT_RS06205 0.60 +0.2 1,416,859 - BPHYT_RS06205 0.60 +0.1 1,416,859 - BPHYT_RS06205 0.60 -0.2 1,416,859 - BPHYT_RS06205 0.60 -0.3 1,416,864 + BPHYT_RS06205 0.62 -1.3 1,417,065 - -0.0 1,417,159 + BPHYT_RS06210 0.16 -0.3 1,417,465 - BPHYT_RS06210 0.72 +3.4 1,417,584 - +0.1 1,417,584 - -0.5
Or see this region's nucleotide sequence