Experiment: 24hr PHYTO3 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02990 and BPHYT_RS02995 are separated by 5 nucleotides BPHYT_RS02995 and BPHYT_RS03000 are separated by 10 nucleotides
BPHYT_RS02990: BPHYT_RS02990 - MFS transporter, at 665,790 to 667,175
_RS02990
BPHYT_RS02995: BPHYT_RS02995 - 2-methylcitrate dehydratase, at 667,181 to 668,593
_RS02995
BPHYT_RS03000: BPHYT_RS03000 - acyl-CoA dehydrogenase, at 668,604 to 669,767
_RS03000
Position (kb) 667
668
669 Strain fitness (log2 ratio) -2
-1
0
1 at 666.322 kb on - strand, within BPHYT_RS02990 at 666.323 kb on + strand, within BPHYT_RS02990 at 666.324 kb on - strand, within BPHYT_RS02990 at 666.324 kb on - strand, within BPHYT_RS02990 at 666.378 kb on - strand, within BPHYT_RS02990 at 666.599 kb on + strand, within BPHYT_RS02990 at 666.599 kb on + strand, within BPHYT_RS02990 at 666.600 kb on - strand, within BPHYT_RS02990 at 666.804 kb on + strand, within BPHYT_RS02990 at 666.868 kb on - strand, within BPHYT_RS02990 at 666.897 kb on + strand, within BPHYT_RS02990 at 666.898 kb on - strand, within BPHYT_RS02990 at 666.955 kb on + strand, within BPHYT_RS02990 at 666.955 kb on + strand, within BPHYT_RS02990 at 668.210 kb on + strand, within BPHYT_RS02995 at 668.211 kb on - strand, within BPHYT_RS02995 at 668.211 kb on - strand, within BPHYT_RS02995 at 668.352 kb on - strand, within BPHYT_RS02995 at 668.468 kb on + strand at 668.526 kb on + strand at 668.527 kb on - strand at 668.591 kb on + strand at 668.592 kb on - strand at 668.717 kb on + strand at 668.817 kb on + strand, within BPHYT_RS03000 at 668.817 kb on + strand, within BPHYT_RS03000 at 668.933 kb on + strand, within BPHYT_RS03000 at 668.934 kb on - strand, within BPHYT_RS03000 at 668.937 kb on + strand, within BPHYT_RS03000 at 668.938 kb on - strand, within BPHYT_RS03000 at 669.052 kb on - strand, within BPHYT_RS03000 at 669.224 kb on + strand, within BPHYT_RS03000 at 669.225 kb on - strand, within BPHYT_RS03000 at 669.319 kb on + strand, within BPHYT_RS03000 at 669.406 kb on - strand, within BPHYT_RS03000 at 669.406 kb on - strand, within BPHYT_RS03000 at 669.406 kb on - strand, within BPHYT_RS03000 at 669.532 kb on - strand, within BPHYT_RS03000 at 669.532 kb on - strand, within BPHYT_RS03000
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 0.1 remove 666,322 - BPHYT_RS02990 0.38 -1.2 666,323 + BPHYT_RS02990 0.38 +0.8 666,324 - BPHYT_RS02990 0.39 +1.4 666,324 - BPHYT_RS02990 0.39 -1.6 666,378 - BPHYT_RS02990 0.42 -0.3 666,599 + BPHYT_RS02990 0.58 -0.2 666,599 + BPHYT_RS02990 0.58 -0.7 666,600 - BPHYT_RS02990 0.58 -1.2 666,804 + BPHYT_RS02990 0.73 -0.2 666,868 - BPHYT_RS02990 0.78 -0.0 666,897 + BPHYT_RS02990 0.80 -0.5 666,898 - BPHYT_RS02990 0.80 -1.0 666,955 + BPHYT_RS02990 0.84 +1.1 666,955 + BPHYT_RS02990 0.84 +0.7 668,210 + BPHYT_RS02995 0.73 +0.0 668,211 - BPHYT_RS02995 0.73 -0.5 668,211 - BPHYT_RS02995 0.73 -0.5 668,352 - BPHYT_RS02995 0.83 -1.8 668,468 + -0.4 668,526 + -0.8 668,527 - +0.0 668,591 + -0.2 668,592 - +0.0 668,717 + +0.9 668,817 + BPHYT_RS03000 0.18 -0.1 668,817 + BPHYT_RS03000 0.18 +0.4 668,933 + BPHYT_RS03000 0.28 +0.4 668,934 - BPHYT_RS03000 0.28 -0.6 668,937 + BPHYT_RS03000 0.29 -0.5 668,938 - BPHYT_RS03000 0.29 -0.1 669,052 - BPHYT_RS03000 0.38 -0.2 669,224 + BPHYT_RS03000 0.53 -0.4 669,225 - BPHYT_RS03000 0.53 -0.6 669,319 + BPHYT_RS03000 0.61 +0.0 669,406 - BPHYT_RS03000 0.69 -0.7 669,406 - BPHYT_RS03000 0.69 -0.9 669,406 - BPHYT_RS03000 0.69 -0.6 669,532 - BPHYT_RS03000 0.80 +0.8 669,532 - BPHYT_RS03000 0.80 -0.5
Or see this region's nucleotide sequence