Experiment: 24hr PHYTO3 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00955 and BPHYT_RS00960 are separated by 37 nucleotides BPHYT_RS00960 and BPHYT_RS00965 are separated by 276 nucleotides
BPHYT_RS00955: BPHYT_RS00955 - DNA polymerase, at 220,029 to 221,378
_RS00955
BPHYT_RS00960: BPHYT_RS00960 - recombinase RecA, at 221,416 to 222,114
_RS00960
BPHYT_RS00965: BPHYT_RS00965 - ArsR family transcriptional regulator, at 222,391 to 222,723
_RS00965
Position (kb) 221
222
223 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 220.608 kb on + strand, within BPHYT_RS00955 at 220.719 kb on + strand, within BPHYT_RS00955 at 220.719 kb on + strand, within BPHYT_RS00955 at 220.819 kb on + strand, within BPHYT_RS00955 at 220.819 kb on + strand, within BPHYT_RS00955 at 220.819 kb on + strand at 221.261 kb on + strand at 221.261 kb on + strand at 221.261 kb on + strand at 221.261 kb on + strand at 221.291 kb on - strand at 221.291 kb on - strand at 221.316 kb on - strand at 221.698 kb on + strand, within BPHYT_RS00960 at 221.699 kb on - strand, within BPHYT_RS00960 at 221.699 kb on - strand, within BPHYT_RS00960 at 221.869 kb on - strand, within BPHYT_RS00960 at 222.110 kb on + strand at 222.110 kb on + strand at 222.111 kb on - strand at 222.111 kb on - strand at 222.114 kb on + strand at 222.114 kb on + strand at 222.114 kb on + strand at 222.114 kb on + strand at 222.114 kb on + strand at 222.114 kb on + strand at 222.115 kb on - strand at 222.115 kb on - strand at 222.115 kb on - strand at 222.167 kb on - strand at 222.305 kb on - strand at 222.379 kb on + strand at 222.379 kb on + strand at 222.379 kb on + strand at 222.380 kb on - strand at 222.380 kb on - strand at 222.411 kb on - strand at 222.607 kb on + strand, within BPHYT_RS00965 at 222.755 kb on + strand at 222.756 kb on - strand at 222.756 kb on - strand at 222.777 kb on + strand at 222.777 kb on + strand at 222.778 kb on - strand at 222.778 kb on - strand at 222.866 kb on + strand at 222.867 kb on - strand at 223.005 kb on - strand at 223.018 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 0.1 remove 220,608 + BPHYT_RS00955 0.43 -1.2 220,719 + BPHYT_RS00955 0.51 +0.4 220,719 + BPHYT_RS00955 0.51 -1.3 220,819 + BPHYT_RS00955 0.59 -0.1 220,819 + BPHYT_RS00955 0.59 +0.2 220,819 + -1.3 221,261 + -1.0 221,261 + +0.4 221,261 + +0.3 221,261 + -1.0 221,291 - -0.8 221,291 - +0.0 221,316 - -1.4 221,698 + BPHYT_RS00960 0.40 +0.8 221,699 - BPHYT_RS00960 0.40 +0.5 221,699 - BPHYT_RS00960 0.40 +0.8 221,869 - BPHYT_RS00960 0.65 +0.9 222,110 + +0.0 222,110 + +0.3 222,111 - +0.7 222,111 - -0.4 222,114 + -0.5 222,114 + -0.6 222,114 + -0.2 222,114 + -0.1 222,114 + -0.1 222,114 + +0.9 222,115 - +4.5 222,115 - +0.6 222,115 - -0.2 222,167 - -0.9 222,305 - -1.0 222,379 + -0.5 222,379 + -0.0 222,379 + +0.3 222,380 - +1.5 222,380 - -0.2 222,411 - -0.1 222,607 + BPHYT_RS00965 0.65 -0.5 222,755 + +1.2 222,756 - +2.1 222,756 - -1.4 222,777 + -0.5 222,777 + -0.2 222,778 - -1.3 222,778 - +0.8 222,866 + -0.2 222,867 - -1.0 223,005 - -2.2 223,018 + +0.5
Or see this region's nucleotide sequence