Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36430

Experiment: 24hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36420 and BPHYT_RS36425 are separated by 377 nucleotidesBPHYT_RS36425 and BPHYT_RS36430 are separated by 178 nucleotidesBPHYT_RS36430 and BPHYT_RS36435 overlap by 14 nucleotidesBPHYT_RS36435 and BPHYT_RS36440 are separated by 657 nucleotides BPHYT_RS36420: BPHYT_RS36420 - hypothetical protein, at 97,896 to 98,369 _RS36420 BPHYT_RS36425: BPHYT_RS36425 - hypothetical protein, at 98,747 to 99,136 _RS36425 BPHYT_RS36430: BPHYT_RS36430 - hypothetical protein, at 99,315 to 99,608 _RS36430 BPHYT_RS36435: BPHYT_RS36435 - hypothetical protein, at 99,595 to 99,933 _RS36435 BPHYT_RS36440: BPHYT_RS36440 - hypothetical protein, at 100,591 to 100,908 _RS36440 Position (kb) 99 100Strain fitness (log2 ratio) -1 0 1at 99.374 kb on + strand, within BPHYT_RS36430at 99.554 kb on - strand, within BPHYT_RS36430at 99.639 kb on - strand, within BPHYT_RS36435at 99.722 kb on + strand, within BPHYT_RS36435at 100.402 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 1
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99,374 + BPHYT_RS36430 0.20 +0.6
99,554 - BPHYT_RS36430 0.81 -0.4
99,639 - BPHYT_RS36435 0.13 -1.0
99,722 + BPHYT_RS36435 0.37 +0.1
100,402 + -1.5

Or see this region's nucleotide sequence