Experiment: 24hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36410 and BPHYT_RS36415 overlap by 11 nucleotides BPHYT_RS36415 and BPHYT_RS36420 are separated by 514 nucleotides BPHYT_RS36420 and BPHYT_RS36425 are separated by 377 nucleotides BPHYT_RS36425 and BPHYT_RS36430 are separated by 178 nucleotides
BPHYT_RS36410: BPHYT_RS36410 - integrase family protein, at 94,993 to 96,930
_RS36410
BPHYT_RS36415: BPHYT_RS36415 - hypothetical protein, at 96,920 to 97,381
_RS36415
BPHYT_RS36420: BPHYT_RS36420 - hypothetical protein, at 97,896 to 98,369
_RS36420
BPHYT_RS36425: BPHYT_RS36425 - hypothetical protein, at 98,747 to 99,136
_RS36425
BPHYT_RS36430: BPHYT_RS36430 - hypothetical protein, at 99,315 to 99,608
_RS36430
Position (kb) 97
98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 96.963 kb on - strand at 97.108 kb on - strand, within BPHYT_RS36415 at 97.153 kb on - strand, within BPHYT_RS36415 at 97.450 kb on - strand at 97.492 kb on - strand at 97.492 kb on - strand at 97.573 kb on - strand at 97.614 kb on + strand at 97.615 kb on - strand at 97.671 kb on - strand at 98.145 kb on + strand, within BPHYT_RS36420 at 98.146 kb on - strand, within BPHYT_RS36420 at 98.205 kb on + strand, within BPHYT_RS36420
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 1 remove 96,963 - +0.1 97,108 - BPHYT_RS36415 0.41 +2.5 97,153 - BPHYT_RS36415 0.50 -0.0 97,450 - +1.5 97,492 - -0.5 97,492 - -0.2 97,573 - -0.9 97,614 + -0.2 97,615 - -0.3 97,671 - +0.2 98,145 + BPHYT_RS36420 0.53 -3.2 98,146 - BPHYT_RS36420 0.53 -0.5 98,205 + BPHYT_RS36420 0.65 -0.7
Or see this region's nucleotide sequence