Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36415
Experiment: 24hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | 24hr PHYTO3 MOI 1 |
|---|---|---|---|---|---|
| remove | |||||
| 96,143 | - | BPHYT_RS36410 | 0.59 | +0.4 | |
| 96,611 | - | +1.2 | |||
| 96,655 | + | BPHYT_RS36410 | 0.86 | +1.1 | |
| 96,963 | - | +0.1 | |||
| 97,108 | - | BPHYT_RS36415 | 0.41 | +2.5 | |
| 97,153 | - | BPHYT_RS36415 | 0.50 | -0.0 | |
| 97,450 | - | +1.5 | |||
| 97,492 | - | -0.5 | |||
| 97,492 | - | -0.2 | |||
| 97,573 | - | -0.9 | |||
| 97,614 | + | -0.2 | |||
| 97,615 | - | -0.3 | |||
| 97,671 | - | +0.2 | |||
| 98,145 | + | BPHYT_RS36420 | 0.53 | -3.2 | |
| 98,146 | - | BPHYT_RS36420 | 0.53 | -0.5 | |
| 98,205 | + | BPHYT_RS36420 | 0.65 | -0.7 |
Or see this region's nucleotide sequence