Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32310
Experiment: 24hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 24hr PHYTO3 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,817,813 | + | -1.2 | |||
2,817,848 | + | +0.1 | |||
2,817,860 | + | BPHYT_RS32305 | 0.11 | -0.8 | |
2,817,948 | + | BPHYT_RS32305 | 0.32 | +2.9 | |
2,818,328 | - | -0.7 | |||
2,818,328 | - | -1.3 | |||
2,818,775 | - | BPHYT_RS32310 | 0.32 | -1.4 | |
2,818,834 | + | BPHYT_RS32310 | 0.37 | -1.2 | |
2,818,969 | - | BPHYT_RS32310 | 0.49 | +0.2 | |
2,819,426 | - | BPHYT_RS32310 | 0.87 | -0.3 | |
2,819,621 | + | +2.3 | |||
2,820,155 | + | BPHYT_RS32315 | 0.35 | -1.0 |
Or see this region's nucleotide sequence