Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27065

Experiment: 24hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27060 and BPHYT_RS27065 are separated by 162 nucleotidesBPHYT_RS27065 and BPHYT_RS27070 are separated by 91 nucleotides BPHYT_RS27060: BPHYT_RS27060 - photosystem reaction center subunit H, at 1,645,414 to 1,645,911 _RS27060 BPHYT_RS27065: BPHYT_RS27065 - hypothetical protein, at 1,646,074 to 1,646,463 _RS27065 BPHYT_RS27070: BPHYT_RS27070 - cation transporter, at 1,646,555 to 1,647,874 _RS27070 Position (kb) 1646 1647Strain fitness (log2 ratio) -3 -2 -1 0 1at 1645.082 kb on + strandat 1645.142 kb on + strandat 1645.142 kb on + strandat 1645.792 kb on + strand, within BPHYT_RS27060at 1645.795 kb on + strand, within BPHYT_RS27060at 1645.796 kb on - strand, within BPHYT_RS27060at 1646.367 kb on + strand, within BPHYT_RS27065at 1646.603 kb on - strandat 1646.740 kb on + strand, within BPHYT_RS27070at 1646.741 kb on - strand, within BPHYT_RS27070at 1647.307 kb on + strand, within BPHYT_RS27070at 1647.308 kb on - strand, within BPHYT_RS27070at 1647.311 kb on + strand, within BPHYT_RS27070at 1647.311 kb on + strand, within BPHYT_RS27070at 1647.312 kb on - strand, within BPHYT_RS27070at 1647.461 kb on + strand, within BPHYT_RS27070at 1647.461 kb on + strand, within BPHYT_RS27070at 1647.463 kb on + strand, within BPHYT_RS27070

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 1
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1,645,082 + -0.2
1,645,142 + +0.4
1,645,142 + -1.9
1,645,792 + BPHYT_RS27060 0.76 -1.3
1,645,795 + BPHYT_RS27060 0.77 -0.0
1,645,796 - BPHYT_RS27060 0.77 -0.7
1,646,367 + BPHYT_RS27065 0.75 -0.0
1,646,603 - -1.5
1,646,740 + BPHYT_RS27070 0.14 +0.0
1,646,741 - BPHYT_RS27070 0.14 -0.1
1,647,307 + BPHYT_RS27070 0.57 -0.3
1,647,308 - BPHYT_RS27070 0.57 -2.9
1,647,311 + BPHYT_RS27070 0.57 -0.4
1,647,311 + BPHYT_RS27070 0.57 +0.5
1,647,312 - BPHYT_RS27070 0.57 +0.3
1,647,461 + BPHYT_RS27070 0.69 -1.0
1,647,461 + BPHYT_RS27070 0.69 +0.0
1,647,463 + BPHYT_RS27070 0.69 +0.1

Or see this region's nucleotide sequence