Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23425

Experiment: 24hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23420 and BPHYT_RS23425 are separated by 88 nucleotidesBPHYT_RS23425 and BPHYT_RS23430 are separated by 229 nucleotides BPHYT_RS23420: BPHYT_RS23420 - acetoacetyl-CoA synthase, at 819,128 to 822,193 _RS23420 BPHYT_RS23425: BPHYT_RS23425 - mannitol dehydrogenase, at 822,282 to 823,772 _RS23425 BPHYT_RS23430: BPHYT_RS23430 - bifunctional D-altronate/D-mannonate dehydratase, at 824,002 to 825,210 _RS23430 Position (kb) 822 823 824Strain fitness (log2 ratio) -1 0 1 2at 821.840 kb on - strand, within BPHYT_RS23420at 823.387 kb on - strand, within BPHYT_RS23425at 823.515 kb on - strand, within BPHYT_RS23425at 823.515 kb on - strand, within BPHYT_RS23425at 823.517 kb on - strand, within BPHYT_RS23425at 823.517 kb on - strand, within BPHYT_RS23425at 824.207 kb on - strand, within BPHYT_RS23430

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 1
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821,840 - BPHYT_RS23420 0.88 -1.3
823,387 - BPHYT_RS23425 0.74 -1.2
823,515 - BPHYT_RS23425 0.83 -0.7
823,515 - BPHYT_RS23425 0.83 -0.1
823,517 - BPHYT_RS23425 0.83 +2.3
823,517 - BPHYT_RS23425 0.83 -0.5
824,207 - BPHYT_RS23430 0.17 -1.1

Or see this region's nucleotide sequence