Experiment: 24hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21560 and BPHYT_RS21565 are separated by 9 nucleotides BPHYT_RS21565 and BPHYT_RS21570 are separated by 376 nucleotides
BPHYT_RS21560: BPHYT_RS21560 - GntR family transcriptional regulator, at 395,907 to 397,322
_RS21560
BPHYT_RS21565: BPHYT_RS21565 - lysine transporter LysE, at 397,332 to 397,955
_RS21565
BPHYT_RS21570: BPHYT_RS21570 - oxidoreductase, at 398,332 to 399,021
_RS21570
Position (kb) 397
398 Strain fitness (log2 ratio) -2
-1
0
1
2 at 396.354 kb on + strand, within BPHYT_RS21560 at 396.840 kb on + strand, within BPHYT_RS21560 at 396.888 kb on + strand, within BPHYT_RS21560 at 397.190 kb on + strand at 397.213 kb on - strand at 397.213 kb on - strand at 397.258 kb on + strand at 397.259 kb on - strand at 397.292 kb on + strand at 397.320 kb on + strand at 397.499 kb on - strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.693 kb on + strand, within BPHYT_RS21565 at 397.732 kb on + strand, within BPHYT_RS21565 at 397.732 kb on + strand, within BPHYT_RS21565 at 397.733 kb on - strand, within BPHYT_RS21565 at 397.948 kb on + strand at 397.948 kb on + strand at 397.948 kb on + strand at 397.949 kb on - strand at 397.997 kb on - strand at 398.167 kb on + strand at 398.168 kb on - strand at 398.168 kb on - strand at 398.170 kb on - strand at 398.389 kb on + strand at 398.390 kb on - strand at 398.495 kb on + strand, within BPHYT_RS21570 at 398.495 kb on + strand, within BPHYT_RS21570 at 398.533 kb on + strand, within BPHYT_RS21570 at 398.533 kb on + strand, within BPHYT_RS21570 at 398.534 kb on - strand, within BPHYT_RS21570 at 398.934 kb on + strand, within BPHYT_RS21570
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 1 remove 396,354 + BPHYT_RS21560 0.32 -1.1 396,840 + BPHYT_RS21560 0.66 -0.4 396,888 + BPHYT_RS21560 0.69 -0.5 397,190 + +0.3 397,213 - +0.4 397,213 - +2.1 397,258 + -0.6 397,259 - +0.0 397,292 + -0.6 397,320 + +0.9 397,499 - BPHYT_RS21565 0.27 +0.1 397,534 + BPHYT_RS21565 0.32 +0.2 397,534 + BPHYT_RS21565 0.32 +0.1 397,534 + BPHYT_RS21565 0.32 -0.3 397,693 + BPHYT_RS21565 0.58 +1.1 397,732 + BPHYT_RS21565 0.64 -0.4 397,732 + BPHYT_RS21565 0.64 -0.2 397,733 - BPHYT_RS21565 0.64 -1.9 397,948 + +1.0 397,948 + -1.3 397,948 + +2.4 397,949 - -0.9 397,997 - -0.1 398,167 + -1.1 398,168 - -0.4 398,168 - +1.3 398,170 - +1.6 398,389 + -1.0 398,390 - -0.6 398,495 + BPHYT_RS21570 0.24 -0.6 398,495 + BPHYT_RS21570 0.24 -0.8 398,533 + BPHYT_RS21570 0.29 -0.4 398,533 + BPHYT_RS21570 0.29 -1.2 398,534 - BPHYT_RS21570 0.29 -0.4 398,934 + BPHYT_RS21570 0.87 -1.1
Or see this region's nucleotide sequence