Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19890

Experiment: 24hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19885 and BPHYT_RS19890 are separated by 368 nucleotidesBPHYT_RS19890 and BPHYT_RS19895 are separated by 47 nucleotidesBPHYT_RS19895 and BPHYT_RS19900 are separated by 303 nucleotides BPHYT_RS19885: BPHYT_RS19885 - hypothetical protein, at 3,938 to 5,911 _RS19885 BPHYT_RS19890: BPHYT_RS19890 - hypothetical protein, at 6,280 to 6,783 _RS19890 BPHYT_RS19895: BPHYT_RS19895 - rod shape-determining protein RodA, at 6,831 to 7,265 _RS19895 BPHYT_RS19900: BPHYT_RS19900 - hypothetical protein, at 7,569 to 7,850 _RS19900 Position (kb) 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 5.330 kb on - strand, within BPHYT_RS19885at 5.943 kb on - strandat 6.035 kb on - strandat 6.038 kb on - strandat 6.112 kb on + strandat 6.113 kb on - strandat 6.128 kb on + strandat 6.129 kb on - strandat 6.129 kb on - strandat 6.129 kb on - strandat 6.379 kb on - strand, within BPHYT_RS19890at 6.939 kb on - strand, within BPHYT_RS19895at 7.653 kb on + strand, within BPHYT_RS19900

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 1
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5,330 - BPHYT_RS19885 0.71 +0.4
5,943 - +0.5
6,035 - +2.0
6,038 - +0.4
6,112 + -0.5
6,113 - -1.0
6,128 + -1.0
6,129 - -0.5
6,129 - -1.9
6,129 - -2.3
6,379 - BPHYT_RS19890 0.20 +0.5
6,939 - BPHYT_RS19895 0.25 +0.2
7,653 + BPHYT_RS19900 0.30 +0.2

Or see this region's nucleotide sequence