Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12145

Experiment: 24hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO3 MOI 1
2,767,186	-				-1.2
2,767,232	-				-0.5
2,767,232	-				+0.8
2,767,348	+				+0.4
2,767,348	+				+0.6
2,767,348	+				+0.6
2,767,349	-				-1.3
2,767,349	-				+0.3
2,767,349	-				-0.3
2,767,369	+				-0.8
2,767,369	+				-1.4
2,767,370	-				+0.9
2,767,398	+				-0.6
2,767,402	-				-1.7
2,767,471	+				-2.2
2,767,471	+				-1.4
2,767,471	+				-1.1
2,767,534	+		BPHYT_RS12145	0.17	+0.5
2,767,534	+		BPHYT_RS12145	0.17	+0.5
2,767,534	+		BPHYT_RS12145	0.17	+0.2
2,767,535	-		BPHYT_RS12145	0.18	+0.2
2,767,535	-		BPHYT_RS12145	0.18	-0.3
2,767,577	-		BPHYT_RS12145	0.23	+0.9
2,767,577	-		BPHYT_RS12145	0.23	+1.1
2,767,717	+		BPHYT_RS12145	0.40	+1.2
2,767,718	-		BPHYT_RS12145	0.40	+3.4
2,767,906	+		BPHYT_RS12145	0.63	-0.7
2,767,931	+		BPHYT_RS12145	0.66	+0.3
2,767,960	+		BPHYT_RS12145	0.70	+0.4
2,767,961	-		BPHYT_RS12145	0.70	-0.2
2,768,043	+		BPHYT_RS12145	0.80	-0.5
2,768,112	+		BPHYT_RS12145	0.89	-0.1
2,768,112	+		BPHYT_RS12145	0.89	+0.3
2,768,113	-		BPHYT_RS12145	0.89	-1.0
2,768,113	-		BPHYT_RS12145	0.89	+0.6
2,768,113	-		BPHYT_RS12145	0.89	+2.6
2,768,239	-				+1.4
2,768,239	-				-1.1
2,768,239	-				+2.4
2,768,239	-				+1.6
2,768,287	+				+0.6
2,768,287	+				+0.6
2,768,288	-				+1.5
2,768,288	-				+2.0
2,768,430	-				+2.3
2,768,430	-				+2.3
2,768,544	+		BPHYT_RS12150	0.12	+2.1
2,768,668	-		BPHYT_RS12150	0.17	+2.6
2,768,886	+		BPHYT_RS12150	0.25	+1.6
2,768,887	-		BPHYT_RS12150	0.25	+2.4
2,768,887	-		BPHYT_RS12150	0.25	+2.1
2,768,990	+		BPHYT_RS12150	0.29	+2.3
2,768,991	-		BPHYT_RS12150	0.29	+2.3
2,768,991	-		BPHYT_RS12150	0.29	+1.3
2,768,991	-		BPHYT_RS12150	0.29	+2.1
2,769,106	+		BPHYT_RS12150	0.34	+1.3
2,769,106	+		BPHYT_RS12150	0.34	+1.7
2,769,109	+		BPHYT_RS12150	0.34	+1.3
2,769,109	+		BPHYT_RS12150	0.34	+2.5
2,769,109	+		BPHYT_RS12150	0.34	+2.1
2,769,110	-		BPHYT_RS12150	0.34	+2.3
2,769,110	-		BPHYT_RS12150	0.34	+2.5
2,769,110	-		BPHYT_RS12150	0.34	+2.2
2,769,195	+		BPHYT_RS12150	0.37	+0.1
2,769,195	+		BPHYT_RS12150	0.37	+0.3
2,769,196	-		BPHYT_RS12150	0.37	+1.5