Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11920

Experiment: 24hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11915 and BPHYT_RS11920 are separated by 788 nucleotidesBPHYT_RS11920 and BPHYT_RS11925 are separated by 183 nucleotides BPHYT_RS11915: BPHYT_RS11915 - hypothetical protein, at 2,710,206 to 2,710,628 _RS11915 BPHYT_RS11920: BPHYT_RS11920 - membrane protein, at 2,711,417 to 2,712,418 _RS11920 BPHYT_RS11925: BPHYT_RS11925 - membrane protein, at 2,712,602 to 2,713,873 _RS11925 Position (kb) 2711 2712 2713Strain fitness (log2 ratio) -3 -2 -1 0 1at 2710.559 kb on - strand, within BPHYT_RS11915at 2711.237 kb on + strandat 2711.735 kb on + strand, within BPHYT_RS11920at 2712.173 kb on - strand, within BPHYT_RS11920at 2713.380 kb on + strand, within BPHYT_RS11925at 2713.411 kb on + strand, within BPHYT_RS11925at 2713.416 kb on + strand, within BPHYT_RS11925at 2713.417 kb on - strand, within BPHYT_RS11925

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 1
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2,710,559 - BPHYT_RS11915 0.83 -0.1
2,711,237 + -0.2
2,711,735 + BPHYT_RS11920 0.32 -3.1
2,712,173 - BPHYT_RS11920 0.75 -0.1
2,713,380 + BPHYT_RS11925 0.61 -0.5
2,713,411 + BPHYT_RS11925 0.64 +0.3
2,713,416 + BPHYT_RS11925 0.64 -0.3
2,713,417 - BPHYT_RS11925 0.64 +0.2

Or see this region's nucleotide sequence