Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08490

Experiment: 24hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08485 and BPHYT_RS08490 are separated by 36 nucleotidesBPHYT_RS08490 and BPHYT_RS08495 are separated by 629 nucleotides BPHYT_RS08485: BPHYT_RS08485 - undecaprenyl-phosphate glucose phosphotransferase, at 1,939,953 to 1,941,350 _RS08485 BPHYT_RS08490: BPHYT_RS08490 - Crp/Fnr family transcriptional regulator, at 1,941,387 to 1,942,121 _RS08490 BPHYT_RS08495: BPHYT_RS08495 - beta-mannosidase, at 1,942,751 to 1,945,399 _RS08495 Position (kb) 1941 1942 1943Strain fitness (log2 ratio) -1 0 1at 1940.696 kb on + strand, within BPHYT_RS08485at 1941.009 kb on - strand, within BPHYT_RS08485at 1941.182 kb on - strand, within BPHYT_RS08485at 1941.319 kb on - strandat 1941.737 kb on - strand, within BPHYT_RS08490at 1942.308 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 1
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1,940,696 + BPHYT_RS08485 0.53 -0.7
1,941,009 - BPHYT_RS08485 0.76 -0.8
1,941,182 - BPHYT_RS08485 0.88 -0.0
1,941,319 - +0.4
1,941,737 - BPHYT_RS08490 0.48 -1.5
1,942,308 + +1.3

Or see this region's nucleotide sequence