Experiment: 24hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07200 and BPHYT_RS07205 are separated by 111 nucleotides BPHYT_RS07205 and BPHYT_RS07210 are separated by 51 nucleotides BPHYT_RS07210 and BPHYT_RS07215 are separated by 107 nucleotides
BPHYT_RS07200: BPHYT_RS07200 - AraC family transcriptional regulator, at 1,637,141 to 1,638,136
_RS07200
BPHYT_RS07205: BPHYT_RS07205 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,638,248 to 1,638,799
_RS07205
BPHYT_RS07210: BPHYT_RS07210 - permease, at 1,638,851 to 1,639,741
_RS07210
BPHYT_RS07215: BPHYT_RS07215 - LysR family transcriptional regulator, at 1,639,849 to 1,640,754
_RS07215
Position (kb) 1638
1639
1640 Strain fitness (log2 ratio) -1
0
1
2 at 1637.951 kb on + strand, within BPHYT_RS07200 at 1637.951 kb on + strand, within BPHYT_RS07200 at 1637.952 kb on - strand, within BPHYT_RS07200 at 1638.134 kb on + strand at 1638.135 kb on - strand at 1638.440 kb on + strand, within BPHYT_RS07205 at 1638.441 kb on - strand, within BPHYT_RS07205 at 1639.219 kb on - strand, within BPHYT_RS07210 at 1639.219 kb on - strand, within BPHYT_RS07210 at 1639.591 kb on - strand, within BPHYT_RS07210 at 1639.792 kb on - strand at 1639.807 kb on + strand at 1639.812 kb on + strand at 1639.812 kb on + strand at 1639.813 kb on - strand at 1639.820 kb on + strand at 1640.073 kb on - strand, within BPHYT_RS07215 at 1640.327 kb on + strand, within BPHYT_RS07215 at 1640.327 kb on + strand, within BPHYT_RS07215
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 1 remove 1,637,951 + BPHYT_RS07200 0.81 -0.4 1,637,951 + BPHYT_RS07200 0.81 -0.3 1,637,952 - BPHYT_RS07200 0.81 +0.7 1,638,134 + -0.1 1,638,135 - +0.9 1,638,440 + BPHYT_RS07205 0.35 -0.3 1,638,441 - BPHYT_RS07205 0.35 -0.7 1,639,219 - BPHYT_RS07210 0.41 +0.5 1,639,219 - BPHYT_RS07210 0.41 -0.1 1,639,591 - BPHYT_RS07210 0.83 -0.4 1,639,792 - +0.7 1,639,807 + -0.5 1,639,812 + +0.4 1,639,812 + +1.8 1,639,813 - -0.5 1,639,820 + +0.0 1,640,073 - BPHYT_RS07215 0.25 -0.5 1,640,327 + BPHYT_RS07215 0.53 -0.3 1,640,327 + BPHYT_RS07215 0.53 +0.7
Or see this region's nucleotide sequence