Experiment: 24hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06015 and BPHYT_RS06020 are separated by 116 nucleotides BPHYT_RS06020 and BPHYT_RS06025 are separated by 66 nucleotides BPHYT_RS06025 and BPHYT_RS06030 overlap by 1 nucleotides
BPHYT_RS06015: BPHYT_RS06015 - spermidine synthase, at 1,369,158 to 1,370,090
_RS06015
BPHYT_RS06020: BPHYT_RS06020 - hypothetical protein, at 1,370,207 to 1,370,443
_RS06020
BPHYT_RS06025: BPHYT_RS06025 - hypothetical protein, at 1,370,510 to 1,370,755
_RS06025
BPHYT_RS06030: BPHYT_RS06030 - sodium:solute symporter, at 1,370,755 to 1,372,305
_RS06030
Position (kb) 1370
1371 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1369.735 kb on - strand, within BPHYT_RS06015 at 1370.030 kb on + strand at 1370.407 kb on + strand, within BPHYT_RS06020 at 1370.408 kb on - strand, within BPHYT_RS06020 at 1370.410 kb on - strand, within BPHYT_RS06020 at 1370.489 kb on + strand at 1370.492 kb on + strand at 1370.493 kb on - strand at 1370.600 kb on + strand, within BPHYT_RS06025 at 1370.601 kb on - strand, within BPHYT_RS06025 at 1370.697 kb on - strand, within BPHYT_RS06025 at 1370.766 kb on - strand at 1370.817 kb on + strand at 1370.927 kb on - strand, within BPHYT_RS06030 at 1370.936 kb on - strand, within BPHYT_RS06030 at 1371.001 kb on + strand, within BPHYT_RS06030 at 1371.016 kb on + strand, within BPHYT_RS06030 at 1371.016 kb on + strand, within BPHYT_RS06030 at 1371.017 kb on - strand, within BPHYT_RS06030 at 1371.017 kb on - strand, within BPHYT_RS06030 at 1371.074 kb on - strand, within BPHYT_RS06030 at 1371.074 kb on - strand, within BPHYT_RS06030 at 1371.074 kb on - strand, within BPHYT_RS06030 at 1371.166 kb on + strand, within BPHYT_RS06030 at 1371.286 kb on + strand, within BPHYT_RS06030 at 1371.286 kb on + strand, within BPHYT_RS06030 at 1371.286 kb on + strand, within BPHYT_RS06030 at 1371.287 kb on - strand, within BPHYT_RS06030 at 1371.287 kb on - strand, within BPHYT_RS06030 at 1371.682 kb on + strand, within BPHYT_RS06030 at 1371.683 kb on - strand, within BPHYT_RS06030 at 1371.733 kb on + strand, within BPHYT_RS06030 at 1371.734 kb on - strand, within BPHYT_RS06030
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 1 remove 1,369,735 - BPHYT_RS06015 0.62 +0.7 1,370,030 + -0.3 1,370,407 + BPHYT_RS06020 0.84 +0.3 1,370,408 - BPHYT_RS06020 0.85 -0.7 1,370,410 - BPHYT_RS06020 0.86 -0.8 1,370,489 + -0.9 1,370,492 + +0.0 1,370,493 - -2.1 1,370,600 + BPHYT_RS06025 0.37 -1.0 1,370,601 - BPHYT_RS06025 0.37 -2.1 1,370,697 - BPHYT_RS06025 0.76 -0.9 1,370,766 - +0.2 1,370,817 + -0.7 1,370,927 - BPHYT_RS06030 0.11 -0.6 1,370,936 - BPHYT_RS06030 0.12 -0.1 1,371,001 + BPHYT_RS06030 0.16 +0.7 1,371,016 + BPHYT_RS06030 0.17 +0.9 1,371,016 + BPHYT_RS06030 0.17 -0.5 1,371,017 - BPHYT_RS06030 0.17 -1.4 1,371,017 - BPHYT_RS06030 0.17 -0.4 1,371,074 - BPHYT_RS06030 0.21 +0.4 1,371,074 - BPHYT_RS06030 0.21 -0.9 1,371,074 - BPHYT_RS06030 0.21 -0.4 1,371,166 + BPHYT_RS06030 0.26 -0.3 1,371,286 + BPHYT_RS06030 0.34 -3.4 1,371,286 + BPHYT_RS06030 0.34 -1.0 1,371,286 + BPHYT_RS06030 0.34 +0.2 1,371,287 - BPHYT_RS06030 0.34 -0.2 1,371,287 - BPHYT_RS06030 0.34 -0.5 1,371,682 + BPHYT_RS06030 0.60 -0.0 1,371,683 - BPHYT_RS06030 0.60 +1.4 1,371,733 + BPHYT_RS06030 0.63 +1.0 1,371,734 - BPHYT_RS06030 0.63 -0.1
Or see this region's nucleotide sequence