Experiment: 24hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02765 and BPHYT_RS02770 overlap by 11 nucleotides BPHYT_RS02770 and BPHYT_RS02775 are separated by 338 nucleotides BPHYT_RS02775 and BPHYT_RS02780 are separated by 363 nucleotides BPHYT_RS02780 and BPHYT_RS02785 are separated by 42 nucleotides
BPHYT_RS02765: BPHYT_RS02765 - cytochrome BD oxidase subunit I, at 621,058 to 622,650
_RS02765
BPHYT_RS02770: BPHYT_RS02770 - membrane protein, at 622,640 to 622,900
_RS02770
BPHYT_RS02775: BPHYT_RS02775 - RNA polymerase sigma 70, at 623,239 to 624,174
_RS02775
BPHYT_RS02780: BPHYT_RS02780 - deacylase, at 624,538 to 625,101
_RS02780
BPHYT_RS02785: BPHYT_RS02785 - hypothetical protein, at 625,144 to 625,527
_RS02785
Position (kb) 623
624
625 Strain fitness (log2 ratio) -2
-1
0
1
2 at 622.397 kb on + strand, within BPHYT_RS02765 at 622.526 kb on + strand at 622.526 kb on + strand at 622.526 kb on + strand at 622.527 kb on - strand at 622.726 kb on + strand, within BPHYT_RS02770 at 622.727 kb on - strand, within BPHYT_RS02770 at 622.727 kb on - strand, within BPHYT_RS02770 at 622.727 kb on - strand, within BPHYT_RS02770 at 622.778 kb on + strand, within BPHYT_RS02770 at 622.892 kb on + strand at 623.054 kb on + strand at 623.055 kb on - strand at 623.055 kb on - strand at 624.051 kb on - strand, within BPHYT_RS02775 at 624.177 kb on - strand at 624.267 kb on + strand at 624.267 kb on + strand at 624.268 kb on - strand at 624.287 kb on + strand at 624.288 kb on - strand at 624.288 kb on - strand at 624.363 kb on + strand at 624.371 kb on - strand at 624.396 kb on + strand at 624.396 kb on + strand at 624.396 kb on + strand at 624.396 kb on + strand at 624.397 kb on - strand at 624.429 kb on + strand at 624.456 kb on - strand at 624.456 kb on - strand at 624.482 kb on + strand at 624.482 kb on + strand at 624.483 kb on - strand at 624.500 kb on + strand at 624.536 kb on - strand at 624.555 kb on + strand at 625.001 kb on - strand, within BPHYT_RS02780 at 625.065 kb on - strand at 625.079 kb on + strand at 625.079 kb on + strand at 625.079 kb on + strand at 625.079 kb on + strand at 625.079 kb on + strand at 625.080 kb on - strand at 625.081 kb on + strand at 625.081 kb on + strand at 625.091 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 1 remove 622,397 + BPHYT_RS02765 0.84 -0.7 622,526 + +0.9 622,526 + -0.3 622,526 + +2.3 622,527 - +2.3 622,726 + BPHYT_RS02770 0.33 +1.2 622,727 - BPHYT_RS02770 0.33 -0.1 622,727 - BPHYT_RS02770 0.33 +0.5 622,727 - BPHYT_RS02770 0.33 +0.9 622,778 + BPHYT_RS02770 0.53 -0.7 622,892 + +0.3 623,054 + -0.0 623,055 - -0.8 623,055 - -0.1 624,051 - BPHYT_RS02775 0.87 +1.3 624,177 - +0.8 624,267 + +1.0 624,267 + +0.2 624,268 - +0.3 624,287 + -0.1 624,288 - -1.3 624,288 - -0.7 624,363 + -1.0 624,371 - +0.1 624,396 + +2.3 624,396 + +0.1 624,396 + +0.3 624,396 + -0.6 624,397 - -1.6 624,429 + -0.7 624,456 - -0.2 624,456 - +0.3 624,482 + -0.0 624,482 + +0.4 624,483 - -0.6 624,500 + +1.4 624,536 - +1.4 624,555 + -1.8 625,001 - BPHYT_RS02780 0.82 +1.2 625,065 - -0.2 625,079 + -0.2 625,079 + +0.0 625,079 + -1.0 625,079 + -0.1 625,079 + +0.8 625,080 - -0.9 625,081 + -1.0 625,081 + +0.4 625,091 - +1.7
Or see this region's nucleotide sequence