Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02770
Experiment: 24hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 24hr PHYTO3 MOI 1 |
---|---|---|---|---|---|
remove | |||||
622,163 | + | BPHYT_RS02765 | 0.69 | -0.5 | |
622,397 | + | BPHYT_RS02765 | 0.84 | -0.7 | |
622,526 | + | +0.9 | |||
622,526 | + | -0.3 | |||
622,526 | + | +2.3 | |||
622,527 | - | +2.3 | |||
622,726 | + | BPHYT_RS02770 | 0.33 | +1.2 | |
622,727 | - | BPHYT_RS02770 | 0.33 | -0.1 | |
622,727 | - | BPHYT_RS02770 | 0.33 | +0.5 | |
622,727 | - | BPHYT_RS02770 | 0.33 | +0.9 | |
622,778 | + | BPHYT_RS02770 | 0.53 | -0.7 | |
622,892 | + | +0.3 | |||
623,054 | + | -0.0 | |||
623,055 | - | -0.8 | |||
623,055 | - | -0.1 |
Or see this region's nucleotide sequence