Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00060

Experiment: 24hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO3 MOI 1
15,244	+		BPHYT_RS00050	0.39	+0.1
15,289	-		BPHYT_RS00050	0.45	+0.8
15,327	+		BPHYT_RS00050	0.50	-0.6
15,585	+		BPHYT_RS00050	0.85	-1.4
15,585	+		BPHYT_RS00050	0.85	-0.2
15,585	+		BPHYT_RS00050	0.85	-0.3
15,585	+		BPHYT_RS00050	0.85	+0.0
15,664	-				-0.6
15,673	-				-0.1
15,723	+				-0.2
15,723	+				-1.1
15,724	-				-1.6
15,794	+		BPHYT_RS00055	0.12	-2.8
15,795	-		BPHYT_RS00055	0.12	+0.5
16,052	-				+4.2
16,187	+				+1.7
16,277	+				-0.2
16,278	-				-0.3
16,278	-				+0.7
16,310	+				-0.4
16,311	-				-0.6
16,311	-				-1.4
16,319	+				+0.2
16,346	+				+0.2
16,346	+				-1.1
16,359	-				+0.3
16,469	-		BPHYT_RS00060	0.12	-2.4
16,524	-		BPHYT_RS00060	0.14	+1.8
16,553	+		BPHYT_RS00060	0.15	+0.4
16,553	+		BPHYT_RS00060	0.15	+0.0
16,679	+		BPHYT_RS00060	0.20	-0.7
16,680	-		BPHYT_RS00060	0.20	-0.2
16,680	-		BPHYT_RS00060	0.20	-0.3
16,795	+		BPHYT_RS00060	0.24	-0.1
16,796	-		BPHYT_RS00060	0.24	-0.1
16,798	-		BPHYT_RS00060	0.24	-1.0
16,798	-		BPHYT_RS00060	0.24	-0.7
16,798	-		BPHYT_RS00060	0.24	-0.4
16,973	+		BPHYT_RS00060	0.30	+0.6
16,973	+		BPHYT_RS00060	0.30	+0.7
16,973	+		BPHYT_RS00060	0.30	+0.8
16,974	-		BPHYT_RS00060	0.30	-0.8
16,974	-		BPHYT_RS00060	0.30	-1.3
16,974	-		BPHYT_RS00060	0.30	+1.1
16,977	+		BPHYT_RS00060	0.30	+0.1
17,060	-		BPHYT_RS00060	0.33	+0.0
17,215	+		BPHYT_RS00060	0.39	-0.8
17,246	+		BPHYT_RS00060	0.40	-0.2
17,247	-		BPHYT_RS00060	0.40	+0.8
17,255	-		BPHYT_RS00060	0.40	+0.8
17,260	+		BPHYT_RS00060	0.40	+0.2
17,302	+		BPHYT_RS00060	0.42	+0.3
17,303	-		BPHYT_RS00060	0.42	-0.2
17,397	-		BPHYT_RS00060	0.45	-0.6
17,795	-		BPHYT_RS00060	0.59	+1.1
17,795	-		BPHYT_RS00060	0.59	-0.6
17,839	-		BPHYT_RS00060	0.61	-0.8
17,865	+				+2.2
17,865	+		BPHYT_RS00060	0.61	-0.9
17,866	-		BPHYT_RS00060	0.61	+1.5
17,878	+		BPHYT_RS00060	0.62	+0.8
18,018	-		BPHYT_RS00060	0.67	+0.1
18,209	+		BPHYT_RS00060	0.74	+0.4
18,319	-		BPHYT_RS00060	0.77	+0.0
18,431	+		BPHYT_RS00060	0.81	-0.4
18,439	+		BPHYT_RS00060	0.82	+1.4
18,458	-		BPHYT_RS00060	0.82	+2.4
18,489	+		BPHYT_RS00060	0.83	-0.1
18,697	-				-1.0
18,697	-				+0.6
18,730	+				-0.4
18,731	-				-0.3
18,778	-				-0.6
18,806	+				+0.3
18,847	+				+0.4
18,868	+				-0.5
19,731	-				-0.2
19,731	-				-0.9