Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33140

Experiment: 24hr PHYTO3 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS33135 and BPHYT_RS33140 are separated by 110 nucleotidesBPHYT_RS33140 and BPHYT_RS33150 are separated by 778 nucleotides BPHYT_RS33135: BPHYT_RS33135 - LysR family transcriptional regulator, at 3,011,559 to 3,012,446 _RS33135 BPHYT_RS33140: BPHYT_RS33140 - short-chain dehydrogenase, at 3,012,557 to 3,013,306 _RS33140 BPHYT_RS33150: BPHYT_RS33150 - beta-lactamase, at 3,014,085 to 3,015,017 _RS33150 Position (kb) 3012 3013 3014Strain fitness (log2 ratio) -2 -1 0 1at 3011.624 kb on + strandat 3011.932 kb on + strand, within BPHYT_RS33135at 3012.223 kb on - strand, within BPHYT_RS33135at 3012.244 kb on + strand, within BPHYT_RS33135at 3012.447 kb on + strandat 3012.504 kb on + strandat 3012.507 kb on - strandat 3012.507 kb on - strandat 3012.806 kb on + strand, within BPHYT_RS33140at 3013.319 kb on + strandat 3013.427 kb on + strandat 3013.590 kb on - strandat 3014.056 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 10
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3,011,624 + +0.8
3,011,932 + BPHYT_RS33135 0.42 -0.4
3,012,223 - BPHYT_RS33135 0.75 -0.7
3,012,244 + BPHYT_RS33135 0.77 -0.5
3,012,447 + -0.5
3,012,504 + +0.4
3,012,507 - -1.1
3,012,507 - +0.1
3,012,806 + BPHYT_RS33140 0.33 -2.7
3,013,319 + -0.9
3,013,427 + -0.2
3,013,590 - +1.3
3,014,056 + +0.5

Or see this region's nucleotide sequence