Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23880

Experiment: 24hr PHYTO3 MOI 10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS23875 and BPHYT_RS23880 overlap by 4 nucleotidesBPHYT_RS23880 and BPHYT_RS23885 overlap by 4 nucleotides BPHYT_RS23875: BPHYT_RS23875 - sugar ABC transporter ATP-binding protein, at 922,665 to 924,314 _RS23875 BPHYT_RS23880: BPHYT_RS23880 - sugar ABC transporter permease, at 924,311 to 925,342 _RS23880 BPHYT_RS23885: BPHYT_RS23885 - ABC transporter permease, at 925,339 to 926,436 _RS23885 Position (kb) 924 925 926Strain fitness (log2 ratio) -1 0 1 2at 923.389 kb on - strand, within BPHYT_RS23875at 924.281 kb on + strandat 924.281 kb on + strandat 924.546 kb on + strand, within BPHYT_RS23880at 925.199 kb on + strand, within BPHYT_RS23880at 925.900 kb on + strand, within BPHYT_RS23885at 925.901 kb on - strand, within BPHYT_RS23885at 925.936 kb on + strand, within BPHYT_RS23885at 926.009 kb on - strand, within BPHYT_RS23885at 926.059 kb on + strand, within BPHYT_RS23885at 926.059 kb on + strand, within BPHYT_RS23885at 926.060 kb on - strand, within BPHYT_RS23885at 926.127 kb on - strand, within BPHYT_RS23885at 926.159 kb on - strand, within BPHYT_RS23885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 10
remove
923,389 - BPHYT_RS23875 0.44 -0.7
924,281 + -0.0
924,281 + +0.4
924,546 + BPHYT_RS23880 0.23 -0.9
925,199 + BPHYT_RS23880 0.86 -1.7
925,900 + BPHYT_RS23885 0.51 -1.4
925,901 - BPHYT_RS23885 0.51 +0.5
925,936 + BPHYT_RS23885 0.54 -0.7
926,009 - BPHYT_RS23885 0.61 +1.5
926,059 + BPHYT_RS23885 0.66 +0.9
926,059 + BPHYT_RS23885 0.66 +1.8
926,060 - BPHYT_RS23885 0.66 -0.3
926,127 - BPHYT_RS23885 0.72 -0.5
926,159 - BPHYT_RS23885 0.75 -0.5

Or see this region's nucleotide sequence