Experiment: 24hr PHYTO3 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22700 and BPHYT_RS22705 are separated by 131 nucleotides BPHYT_RS22705 and BPHYT_RS22710 overlap by 1 nucleotides BPHYT_RS22710 and BPHYT_RS22715 are separated by 442 nucleotides
BPHYT_RS22700: BPHYT_RS22700 - FAD-dependent oxidoreductase, at 648,156 to 649,436
_RS22700
BPHYT_RS22705: BPHYT_RS22705 - hypothetical protein, at 649,568 to 650,350
_RS22705
BPHYT_RS22710: BPHYT_RS22710 - XRE family transcriptional regulator, at 650,350 to 650,919
_RS22710
BPHYT_RS22715: BPHYT_RS22715 - L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) <small>(from data)</small>, at 651,362 to 652,294
_RS22715
Position (kb) 650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 650.302 kb on - strand at 650.334 kb on + strand at 650.410 kb on - strand, within BPHYT_RS22710 at 650.449 kb on - strand, within BPHYT_RS22710 at 650.784 kb on + strand, within BPHYT_RS22710 at 650.825 kb on + strand, within BPHYT_RS22710 at 650.948 kb on + strand at 650.949 kb on - strand at 650.954 kb on - strand at 650.976 kb on + strand at 650.976 kb on + strand at 651.081 kb on - strand at 651.198 kb on - strand at 651.198 kb on - strand at 651.198 kb on - strand at 651.363 kb on + strand at 651.364 kb on - strand at 651.598 kb on - strand, within BPHYT_RS22715 at 651.598 kb on - strand, within BPHYT_RS22715 at 651.916 kb on - strand, within BPHYT_RS22715 at 651.916 kb on - strand, within BPHYT_RS22715
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 10 remove 650,302 - +2.0 650,334 + +0.6 650,410 - BPHYT_RS22710 0.11 +0.9 650,449 - BPHYT_RS22710 0.17 -0.8 650,784 + BPHYT_RS22710 0.76 +0.6 650,825 + BPHYT_RS22710 0.83 -2.8 650,948 + +0.9 650,949 - +0.4 650,954 - +0.3 650,976 + +1.3 650,976 + -0.2 651,081 - +0.7 651,198 - -0.8 651,198 - +0.1 651,198 - -2.0 651,363 + +2.2 651,364 - +0.8 651,598 - BPHYT_RS22715 0.25 -0.5 651,598 - BPHYT_RS22715 0.25 -1.3 651,916 - BPHYT_RS22715 0.59 +0.2 651,916 - BPHYT_RS22715 0.59 -0.5
Or see this region's nucleotide sequence