Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11615

Experiment: 24hr PHYTO3 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11605 and BPHYT_RS11610 are separated by 208 nucleotidesBPHYT_RS11610 and BPHYT_RS11615 are separated by 23 nucleotidesBPHYT_RS11615 and BPHYT_RS11620 are separated by 280 nucleotides BPHYT_RS11605: BPHYT_RS11605 - DNA polymerase, at 2,636,162 to 2,637,637 _RS11605 BPHYT_RS11610: BPHYT_RS11610 - peroxiredoxin, at 2,637,846 to 2,638,361 _RS11610 BPHYT_RS11615: BPHYT_RS11615 - NmrA family transcriptional regulator, at 2,638,385 to 2,639,140 _RS11615 BPHYT_RS11620: BPHYT_RS11620 - LysR family transcriptional regulator, at 2,639,421 to 2,640,431 _RS11620 Position (kb) 2638 2639 2640Strain fitness (log2 ratio) -2 -1 0 1at 2637.501 kb on - strandat 2637.751 kb on + strandat 2637.752 kb on - strandat 2637.770 kb on + strandat 2637.770 kb on + strandat 2637.771 kb on - strandat 2638.144 kb on - strand, within BPHYT_RS11610at 2638.291 kb on + strand, within BPHYT_RS11610at 2638.318 kb on + strandat 2638.319 kb on - strandat 2638.386 kb on + strandat 2639.233 kb on + strandat 2639.253 kb on + strandat 2639.330 kb on - strandat 2639.333 kb on + strandat 2639.459 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 10
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2,637,501 - +0.0
2,637,751 + +0.4
2,637,752 - +0.8
2,637,770 + -0.3
2,637,770 + +0.4
2,637,771 - -0.5
2,638,144 - BPHYT_RS11610 0.58 +0.7
2,638,291 + BPHYT_RS11610 0.86 -0.2
2,638,318 + +0.3
2,638,319 - -1.1
2,638,386 + -2.0
2,639,233 + -1.1
2,639,253 + -0.8
2,639,330 - +0.0
2,639,333 + -0.6
2,639,459 + -0.0

Or see this region's nucleotide sequence