Experiment: 24hr PHYTO3 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00890 and BPHYT_RS00895 are separated by 236 nucleotides BPHYT_RS00895 and BPHYT_RS00900 are separated by 38 nucleotides BPHYT_RS00900 and BPHYT_RS00905 overlap by 4 nucleotides
BPHYT_RS00890: BPHYT_RS00890 - membrane protein, at 204,111 to 205,199
_RS00890
BPHYT_RS00895: BPHYT_RS00895 - MFS transporter, at 205,436 to 206,818
_RS00895
BPHYT_RS00900: BPHYT_RS00900 - beta-lactamase, at 206,857 to 207,183
_RS00900
BPHYT_RS00905: BPHYT_RS00905 - ABC transporter substrate-binding protein, at 207,180 to 208,517
_RS00905
Position (kb) 205
206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 204.436 kb on + strand, within BPHYT_RS00890 at 204.586 kb on + strand, within BPHYT_RS00890 at 204.620 kb on - strand, within BPHYT_RS00890 at 204.647 kb on - strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.655 kb on - strand, within BPHYT_RS00890 at 204.655 kb on - strand, within BPHYT_RS00890 at 204.655 kb on - strand, within BPHYT_RS00890 at 204.683 kb on - strand, within BPHYT_RS00890 at 204.794 kb on - strand, within BPHYT_RS00890 at 204.810 kb on + strand, within BPHYT_RS00890 at 204.991 kb on - strand, within BPHYT_RS00890 at 205.023 kb on - strand, within BPHYT_RS00890 at 205.247 kb on + strand at 205.675 kb on + strand, within BPHYT_RS00895 at 205.717 kb on - strand, within BPHYT_RS00895 at 205.747 kb on - strand, within BPHYT_RS00895 at 205.759 kb on + strand, within BPHYT_RS00895 at 205.935 kb on + strand, within BPHYT_RS00895 at 206.014 kb on - strand, within BPHYT_RS00895 at 206.193 kb on + strand, within BPHYT_RS00895 at 206.193 kb on + strand, within BPHYT_RS00895 at 206.390 kb on - strand, within BPHYT_RS00895 at 206.432 kb on - strand, within BPHYT_RS00895 at 206.537 kb on + strand, within BPHYT_RS00895 at 206.537 kb on + strand, within BPHYT_RS00895 at 206.538 kb on - strand, within BPHYT_RS00895 at 206.690 kb on + strand at 207.099 kb on - strand, within BPHYT_RS00900 at 207.700 kb on + strand, within BPHYT_RS00905 at 207.701 kb on - strand, within BPHYT_RS00905 at 207.701 kb on - strand, within BPHYT_RS00905 at 207.717 kb on + strand, within BPHYT_RS00905 at 207.718 kb on - strand, within BPHYT_RS00905 at 207.718 kb on - strand, within BPHYT_RS00905 at 207.724 kb on + strand, within BPHYT_RS00905 at 207.811 kb on - strand, within BPHYT_RS00905
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 10 remove 204,436 + BPHYT_RS00890 0.30 -0.6 204,586 + BPHYT_RS00890 0.44 -2.0 204,620 - BPHYT_RS00890 0.47 -1.0 204,647 - BPHYT_RS00890 0.49 +1.1 204,654 + BPHYT_RS00890 0.50 -0.6 204,654 + BPHYT_RS00890 0.50 +1.7 204,654 + BPHYT_RS00890 0.50 +0.4 204,654 + BPHYT_RS00890 0.50 -1.7 204,655 - BPHYT_RS00890 0.50 +0.4 204,655 - BPHYT_RS00890 0.50 -0.8 204,655 - BPHYT_RS00890 0.50 -1.4 204,683 - BPHYT_RS00890 0.53 -0.4 204,794 - BPHYT_RS00890 0.63 -0.6 204,810 + BPHYT_RS00890 0.64 -1.3 204,991 - BPHYT_RS00890 0.81 +0.6 205,023 - BPHYT_RS00890 0.84 -1.3 205,247 + -0.9 205,675 + BPHYT_RS00895 0.17 +0.1 205,717 - BPHYT_RS00895 0.20 -0.9 205,747 - BPHYT_RS00895 0.22 -2.5 205,759 + BPHYT_RS00895 0.23 -1.0 205,935 + BPHYT_RS00895 0.36 -1.0 206,014 - BPHYT_RS00895 0.42 -0.3 206,193 + BPHYT_RS00895 0.55 -2.2 206,193 + BPHYT_RS00895 0.55 -0.8 206,390 - BPHYT_RS00895 0.69 +0.8 206,432 - BPHYT_RS00895 0.72 -1.1 206,537 + BPHYT_RS00895 0.80 +0.4 206,537 + BPHYT_RS00895 0.80 -2.8 206,538 - BPHYT_RS00895 0.80 -0.4 206,690 + -0.6 207,099 - BPHYT_RS00900 0.74 +1.3 207,700 + BPHYT_RS00905 0.39 +0.1 207,701 - BPHYT_RS00905 0.39 -1.3 207,701 - BPHYT_RS00905 0.39 +0.8 207,717 + BPHYT_RS00905 0.40 +1.8 207,718 - BPHYT_RS00905 0.40 -0.6 207,718 - BPHYT_RS00905 0.40 -1.7 207,724 + BPHYT_RS00905 0.41 -0.2 207,811 - BPHYT_RS00905 0.47 -0.1
Or see this region's nucleotide sequence