Experiment: 24hr PHYTO3 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00880 and BPHYT_RS00885 are separated by 46 nucleotides BPHYT_RS00885 and BPHYT_RS00890 are separated by 724 nucleotides
BPHYT_RS00880: BPHYT_RS00880 - hypothetical protein, at 201,106 to 202,275
_RS00880
BPHYT_RS00885: BPHYT_RS00885 - chemotaxis protein CheY, at 202,322 to 203,386
_RS00885
BPHYT_RS00890: BPHYT_RS00890 - membrane protein, at 204,111 to 205,199
_RS00890
Position (kb) 202
203
204 Strain fitness (log2 ratio) -2
-1
0
1 at 201.583 kb on + strand, within BPHYT_RS00880 at 201.584 kb on - strand, within BPHYT_RS00880 at 201.848 kb on + strand, within BPHYT_RS00880 at 201.848 kb on + strand, within BPHYT_RS00880 at 201.849 kb on - strand, within BPHYT_RS00880 at 201.849 kb on - strand, within BPHYT_RS00880 at 201.849 kb on - strand, within BPHYT_RS00880 at 201.943 kb on + strand, within BPHYT_RS00880 at 201.943 kb on + strand, within BPHYT_RS00880 at 201.944 kb on - strand, within BPHYT_RS00880 at 201.944 kb on - strand, within BPHYT_RS00880 at 201.944 kb on - strand, within BPHYT_RS00880 at 201.952 kb on + strand, within BPHYT_RS00880 at 201.953 kb on - strand, within BPHYT_RS00880 at 202.007 kb on + strand, within BPHYT_RS00880 at 202.008 kb on - strand, within BPHYT_RS00880 at 202.008 kb on - strand, within BPHYT_RS00880 at 202.033 kb on + strand, within BPHYT_RS00880 at 202.033 kb on + strand, within BPHYT_RS00880 at 202.034 kb on - strand, within BPHYT_RS00880 at 202.137 kb on - strand, within BPHYT_RS00880 at 202.874 kb on - strand, within BPHYT_RS00885 at 203.234 kb on + strand, within BPHYT_RS00885 at 203.270 kb on + strand, within BPHYT_RS00885 at 203.341 kb on + strand at 203.364 kb on - strand at 203.705 kb on + strand at 203.705 kb on + strand at 203.706 kb on - strand at 203.728 kb on + strand at 203.793 kb on - strand at 203.858 kb on - strand at 203.870 kb on + strand at 203.871 kb on - strand at 203.872 kb on + strand at 203.994 kb on - strand at 203.994 kb on - strand at 204.054 kb on + strand at 204.054 kb on + strand at 204.055 kb on - strand at 204.055 kb on - strand at 204.157 kb on + strand at 204.227 kb on - strand, within BPHYT_RS00890 at 204.268 kb on + strand, within BPHYT_RS00890 at 204.374 kb on - strand, within BPHYT_RS00890
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 10 remove 201,583 + BPHYT_RS00880 0.41 -2.0 201,584 - BPHYT_RS00880 0.41 +0.1 201,848 + BPHYT_RS00880 0.63 -0.4 201,848 + BPHYT_RS00880 0.63 -1.5 201,849 - BPHYT_RS00880 0.64 -0.2 201,849 - BPHYT_RS00880 0.64 -0.0 201,849 - BPHYT_RS00880 0.64 +1.2 201,943 + BPHYT_RS00880 0.72 -0.6 201,943 + BPHYT_RS00880 0.72 +0.7 201,944 - BPHYT_RS00880 0.72 -0.5 201,944 - BPHYT_RS00880 0.72 +0.3 201,944 - BPHYT_RS00880 0.72 +0.2 201,952 + BPHYT_RS00880 0.72 +0.0 201,953 - BPHYT_RS00880 0.72 -0.7 202,007 + BPHYT_RS00880 0.77 +0.1 202,008 - BPHYT_RS00880 0.77 -1.4 202,008 - BPHYT_RS00880 0.77 +0.3 202,033 + BPHYT_RS00880 0.79 +0.6 202,033 + BPHYT_RS00880 0.79 -0.1 202,034 - BPHYT_RS00880 0.79 -1.7 202,137 - BPHYT_RS00880 0.88 -0.3 202,874 - BPHYT_RS00885 0.52 -0.7 203,234 + BPHYT_RS00885 0.86 +0.0 203,270 + BPHYT_RS00885 0.89 -1.7 203,341 + -0.2 203,364 - -1.0 203,705 + -0.0 203,705 + +1.1 203,706 - -0.4 203,728 + +0.8 203,793 - -0.3 203,858 - -2.0 203,870 + +0.3 203,871 - -1.1 203,872 + +0.1 203,994 - +1.6 203,994 - -1.5 204,054 + +0.8 204,054 + -0.9 204,055 - +1.4 204,055 - +1.4 204,157 + +0.6 204,227 - BPHYT_RS00890 0.11 +0.0 204,268 + BPHYT_RS00890 0.14 -0.8 204,374 - BPHYT_RS00890 0.24 +0.4
Or see this region's nucleotide sequence