Experiment: 24hr PHYTO3 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36340 and BPHYT_RS36345 are separated by 164 nucleotides BPHYT_RS36345 and BPHYT_RS36350 are separated by 284 nucleotides
BPHYT_RS36340: BPHYT_RS36340 - hypothetical protein, at 81,104 to 81,769
_RS36340
BPHYT_RS36345: BPHYT_RS36345 - hypothetical protein, at 81,934 to 82,860
_RS36345
BPHYT_RS36350: BPHYT_RS36350 - hypothetical protein, at 83,145 to 84,278
_RS36350
Position (kb) 81
82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 80.995 kb on + strand at 80.996 kb on - strand at 80.996 kb on - strand at 80.996 kb on - strand at 80.996 kb on - strand at 80.996 kb on - strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.150 kb on - strand at 81.312 kb on + strand, within BPHYT_RS36340 at 81.482 kb on + strand, within BPHYT_RS36340 at 81.601 kb on + strand, within BPHYT_RS36340 at 81.726 kb on - strand at 81.726 kb on - strand at 81.990 kb on - strand at 81.990 kb on - strand at 82.259 kb on - strand, within BPHYT_RS36345 at 82.457 kb on - strand, within BPHYT_RS36345 at 82.457 kb on - strand, within BPHYT_RS36345 at 82.500 kb on + strand, within BPHYT_RS36345 at 82.500 kb on + strand, within BPHYT_RS36345 at 82.500 kb on + strand, within BPHYT_RS36345 at 82.501 kb on - strand, within BPHYT_RS36345 at 82.678 kb on + strand, within BPHYT_RS36345 at 82.678 kb on + strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.681 kb on + strand, within BPHYT_RS36345 at 82.681 kb on + strand, within BPHYT_RS36345 at 82.850 kb on + strand at 82.851 kb on - strand at 82.888 kb on + strand at 82.888 kb on + strand at 82.940 kb on - strand at 82.963 kb on + strand at 82.963 kb on + strand at 83.054 kb on - strand at 83.174 kb on + strand at 83.394 kb on + strand, within BPHYT_RS36350
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 10 remove 80,995 + +0.4 80,996 - -1.9 80,996 - -0.3 80,996 - +0.1 80,996 - -2.1 80,996 - +0.3 81,149 + -0.0 81,149 + -1.1 81,149 + -1.1 81,149 + +0.3 81,149 + -1.2 81,150 - +0.3 81,312 + BPHYT_RS36340 0.31 +0.1 81,482 + BPHYT_RS36340 0.57 -0.7 81,601 + BPHYT_RS36340 0.75 -0.9 81,726 - -0.1 81,726 - +0.3 81,990 - -0.2 81,990 - +0.6 82,259 - BPHYT_RS36345 0.35 -0.5 82,457 - BPHYT_RS36345 0.56 -1.8 82,457 - BPHYT_RS36345 0.56 -0.0 82,500 + BPHYT_RS36345 0.61 -0.1 82,500 + BPHYT_RS36345 0.61 -0.3 82,500 + BPHYT_RS36345 0.61 +0.5 82,501 - BPHYT_RS36345 0.61 +0.2 82,678 + BPHYT_RS36345 0.80 +0.6 82,678 + BPHYT_RS36345 0.80 -0.4 82,679 - BPHYT_RS36345 0.80 +0.4 82,679 - BPHYT_RS36345 0.80 -1.3 82,679 - BPHYT_RS36345 0.80 +0.1 82,679 - BPHYT_RS36345 0.80 -1.0 82,681 + BPHYT_RS36345 0.81 +0.2 82,681 + BPHYT_RS36345 0.81 -0.3 82,850 + -0.3 82,851 - -0.1 82,888 + +0.1 82,888 + -0.1 82,940 - -0.3 82,963 + -0.1 82,963 + -0.6 83,054 - -0.0 83,174 + -2.2 83,394 + BPHYT_RS36350 0.22 -3.2
Or see this region's nucleotide sequence