Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30575

Experiment: 24hr PHYTO3 MOI 10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS30565 and BPHYT_RS30570 are separated by 79 nucleotidesBPHYT_RS30570 and BPHYT_RS30575 are separated by 523 nucleotidesBPHYT_RS30575 and BPHYT_RS30580 are separated by 486 nucleotides BPHYT_RS30565: BPHYT_RS30565 - dihydropteridine reductase, at 2,415,542 to 2,416,723 _RS30565 BPHYT_RS30570: BPHYT_RS30570 - hypothetical protein, at 2,416,803 to 2,417,090 _RS30570 BPHYT_RS30575: BPHYT_RS30575 - phasin, at 2,417,614 to 2,418,069 _RS30575 BPHYT_RS30580: BPHYT_RS30580 - cupin, at 2,418,556 to 2,419,065 _RS30580 Position (kb) 2417 2418 2419Strain fitness (log2 ratio) -1 0 1at 2416.804 kb on + strandat 2417.095 kb on + strandat 2417.161 kb on + strandat 2417.165 kb on - strandat 2417.276 kb on - strandat 2417.379 kb on - strandat 2418.014 kb on + strand, within BPHYT_RS30575at 2418.252 kb on - strandat 2418.471 kb on - strandat 2418.471 kb on - strandat 2418.491 kb on - strandat 2418.491 kb on - strandat 2418.491 kb on - strandat 2418.591 kb on + strandat 2418.613 kb on + strand, within BPHYT_RS30580

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 10
remove
2,416,804 + -1.0
2,417,095 + -1.6
2,417,161 + -1.0
2,417,165 - +1.1
2,417,276 - +0.6
2,417,379 - +0.9
2,418,014 + BPHYT_RS30575 0.88 -1.6
2,418,252 - -0.4
2,418,471 - +1.0
2,418,471 - -0.2
2,418,491 - +1.6
2,418,491 - -0.5
2,418,491 - +0.2
2,418,591 + +0.8
2,418,613 + BPHYT_RS30580 0.11 +1.3

Or see this region's nucleotide sequence