Experiment: 24hr PHYTO3 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17800 and BPHYT_RS17805 are separated by 88 nucleotides BPHYT_RS17805 and BPHYT_RS17810 are separated by 91 nucleotides BPHYT_RS17810 and BPHYT_RS17815 are separated by 85 nucleotides BPHYT_RS17815 and BPHYT_RS17820 are separated by 62 nucleotides
BPHYT_RS17800: BPHYT_RS17800 - hypothetical protein, at 4,017,683 to 4,018,144
_RS17800
BPHYT_RS17805: BPHYT_RS17805 - hypothetical protein, at 4,018,233 to 4,018,874
_RS17805
BPHYT_RS17810: BPHYT_RS17810 - transcriptional regulator, at 4,018,966 to 4,019,694
_RS17810
BPHYT_RS17815: BPHYT_RS17815 - flagellar L-ring protein FlgH, at 4,019,780 to 4,020,451
_RS17815
BPHYT_RS17820: BPHYT_RS17820 - hypothetical protein, at 4,020,514 to 4,021,227
_RS17820
Position (kb) 4018
4019
4020 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4018.065 kb on + strand, within BPHYT_RS17800 at 4018.066 kb on - strand, within BPHYT_RS17800 at 4018.261 kb on - strand at 4018.576 kb on - strand, within BPHYT_RS17805 at 4018.674 kb on + strand, within BPHYT_RS17805 at 4018.898 kb on + strand at 4018.953 kb on + strand at 4019.006 kb on + strand at 4019.263 kb on + strand, within BPHYT_RS17810 at 4019.450 kb on - strand, within BPHYT_RS17810 at 4019.468 kb on + strand, within BPHYT_RS17810 at 4019.644 kb on + strand at 4019.867 kb on - strand, within BPHYT_RS17815 at 4019.898 kb on + strand, within BPHYT_RS17815 at 4019.898 kb on + strand, within BPHYT_RS17815 at 4020.217 kb on - strand, within BPHYT_RS17815 at 4020.253 kb on + strand, within BPHYT_RS17815 at 4020.254 kb on - strand, within BPHYT_RS17815 at 4020.304 kb on - strand, within BPHYT_RS17815 at 4020.440 kb on + strand at 4020.441 kb on - strand at 4020.441 kb on - strand at 4020.662 kb on + strand, within BPHYT_RS17820 at 4020.662 kb on + strand, within BPHYT_RS17820 at 4020.663 kb on - strand, within BPHYT_RS17820 at 4020.663 kb on - strand, within BPHYT_RS17820 at 4020.663 kb on - strand, within BPHYT_RS17820 at 4020.663 kb on - strand, within BPHYT_RS17820
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 10 remove 4,018,065 + BPHYT_RS17800 0.83 -1.5 4,018,066 - BPHYT_RS17800 0.83 -1.1 4,018,261 - +0.5 4,018,576 - BPHYT_RS17805 0.53 -1.4 4,018,674 + BPHYT_RS17805 0.69 +0.5 4,018,898 + -0.3 4,018,953 + -1.2 4,019,006 + +0.1 4,019,263 + BPHYT_RS17810 0.41 -0.8 4,019,450 - BPHYT_RS17810 0.66 -0.5 4,019,468 + BPHYT_RS17810 0.69 -0.4 4,019,644 + -1.1 4,019,867 - BPHYT_RS17815 0.13 +0.6 4,019,898 + BPHYT_RS17815 0.18 -0.2 4,019,898 + BPHYT_RS17815 0.18 -0.6 4,020,217 - BPHYT_RS17815 0.65 +0.4 4,020,253 + BPHYT_RS17815 0.70 -0.9 4,020,254 - BPHYT_RS17815 0.71 -0.9 4,020,304 - BPHYT_RS17815 0.78 +0.4 4,020,440 + -1.6 4,020,441 - -0.9 4,020,441 - +1.0 4,020,662 + BPHYT_RS17820 0.21 +0.4 4,020,662 + BPHYT_RS17820 0.21 +0.0 4,020,663 - BPHYT_RS17820 0.21 -1.0 4,020,663 - BPHYT_RS17820 0.21 +0.8 4,020,663 - BPHYT_RS17820 0.21 +1.3 4,020,663 - BPHYT_RS17820 0.21 -3.6
Or see this region's nucleotide sequence