Experiment: 24hr PHYTO3 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03050 and BPHYT_RS03055 are separated by 488 nucleotides BPHYT_RS03055 and BPHYT_RS03060 are separated by 95 nucleotides
BPHYT_RS03050: BPHYT_RS03050 - cytochrome C, at 680,008 to 680,721
_RS03050
BPHYT_RS03055: BPHYT_RS03055 - LysR family transcriptional regulator, at 681,210 to 682,097
_RS03055
BPHYT_RS03060: BPHYT_RS03060 - MFS transporter, at 682,193 to 683,512
_RS03060
Position (kb) 681
682
683 Strain fitness (log2 ratio) -2
-1
0
1
2 at 680.216 kb on + strand, within BPHYT_RS03050 at 680.216 kb on + strand, within BPHYT_RS03050 at 680.432 kb on + strand, within BPHYT_RS03050 at 680.459 kb on + strand, within BPHYT_RS03050 at 680.460 kb on - strand, within BPHYT_RS03050 at 680.475 kb on - strand, within BPHYT_RS03050 at 680.519 kb on + strand, within BPHYT_RS03050 at 680.519 kb on + strand, within BPHYT_RS03050 at 680.552 kb on + strand, within BPHYT_RS03050 at 680.552 kb on + strand, within BPHYT_RS03050 at 680.553 kb on - strand, within BPHYT_RS03050 at 680.671 kb on + strand at 680.671 kb on + strand at 680.678 kb on + strand at 680.679 kb on - strand at 680.706 kb on + strand at 680.706 kb on + strand at 680.747 kb on + strand at 680.748 kb on - strand at 680.760 kb on - strand at 680.810 kb on + strand at 680.810 kb on + strand at 680.810 kb on + strand at 680.839 kb on + strand at 680.841 kb on + strand at 680.842 kb on - strand at 680.921 kb on + strand at 680.921 kb on + strand at 680.922 kb on - strand at 680.923 kb on + strand at 681.007 kb on + strand at 681.007 kb on + strand at 681.008 kb on - strand at 681.040 kb on + strand at 681.080 kb on + strand at 681.080 kb on + strand at 681.081 kb on - strand at 681.375 kb on + strand, within BPHYT_RS03055 at 681.375 kb on + strand, within BPHYT_RS03055 at 681.376 kb on - strand, within BPHYT_RS03055 at 681.443 kb on - strand, within BPHYT_RS03055 at 681.443 kb on - strand, within BPHYT_RS03055 at 681.521 kb on - strand, within BPHYT_RS03055 at 681.787 kb on + strand, within BPHYT_RS03055 at 681.790 kb on + strand, within BPHYT_RS03055 at 681.790 kb on + strand, within BPHYT_RS03055 at 681.790 kb on + strand, within BPHYT_RS03055 at 681.791 kb on - strand, within BPHYT_RS03055 at 681.791 kb on - strand, within BPHYT_RS03055 at 682.751 kb on + strand, within BPHYT_RS03060 at 682.751 kb on + strand at 682.752 kb on - strand, within BPHYT_RS03060 at 682.753 kb on + strand, within BPHYT_RS03060 at 682.753 kb on + strand, within BPHYT_RS03060 at 682.753 kb on + strand, within BPHYT_RS03060 at 683.025 kb on + strand, within BPHYT_RS03060 at 683.026 kb on - strand, within BPHYT_RS03060
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO3 MOI 10 remove 680,216 + BPHYT_RS03050 0.29 -1.1 680,216 + BPHYT_RS03050 0.29 +0.3 680,432 + BPHYT_RS03050 0.59 +0.1 680,459 + BPHYT_RS03050 0.63 -2.4 680,460 - BPHYT_RS03050 0.63 -2.3 680,475 - BPHYT_RS03050 0.65 +0.0 680,519 + BPHYT_RS03050 0.72 -0.5 680,519 + BPHYT_RS03050 0.72 -0.9 680,552 + BPHYT_RS03050 0.76 +2.5 680,552 + BPHYT_RS03050 0.76 +0.7 680,553 - BPHYT_RS03050 0.76 -2.6 680,671 + -0.3 680,671 + -1.6 680,678 + +0.3 680,679 - +0.4 680,706 + -0.2 680,706 + -0.8 680,747 + -1.9 680,748 - +1.6 680,760 - -0.1 680,810 + -1.8 680,810 + +0.8 680,810 + +0.7 680,839 + -2.6 680,841 + -0.4 680,842 - +0.2 680,921 + +0.2 680,921 + +0.3 680,922 - -0.6 680,923 + +0.7 681,007 + +0.4 681,007 + +0.2 681,008 - -1.5 681,040 + -0.4 681,080 + -0.7 681,080 + +0.4 681,081 - -1.1 681,375 + BPHYT_RS03055 0.19 -0.6 681,375 + BPHYT_RS03055 0.19 +0.1 681,376 - BPHYT_RS03055 0.19 -0.3 681,443 - BPHYT_RS03055 0.26 -2.6 681,443 - BPHYT_RS03055 0.26 -0.3 681,521 - BPHYT_RS03055 0.35 +0.8 681,787 + BPHYT_RS03055 0.65 -1.6 681,790 + BPHYT_RS03055 0.65 -0.3 681,790 + BPHYT_RS03055 0.65 -0.7 681,790 + BPHYT_RS03055 0.65 -0.3 681,791 - BPHYT_RS03055 0.65 +0.0 681,791 - BPHYT_RS03055 0.65 -1.1 682,751 + BPHYT_RS03060 0.42 +2.0 682,751 + +0.4 682,752 - BPHYT_RS03060 0.42 -0.6 682,753 + BPHYT_RS03060 0.42 -1.1 682,753 + BPHYT_RS03060 0.42 +0.0 682,753 + BPHYT_RS03060 0.42 +0.3 683,025 + BPHYT_RS03060 0.63 -0.3 683,026 - BPHYT_RS03060 0.63 +0.0
Or see this region's nucleotide sequence