Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31055

Experiment: 24hr PHYTO2 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31050 and BPHYT_RS31055 are separated by 30 nucleotidesBPHYT_RS31055 and BPHYT_RS31060 are separated by 47 nucleotides BPHYT_RS31050: BPHYT_RS31050 - epimerase, at 2,521,458 to 2,522,597 _RS31050 BPHYT_RS31055: BPHYT_RS31055 - glycosyl transferase, at 2,522,628 to 2,523,494 _RS31055 BPHYT_RS31060: BPHYT_RS31060 - capsular polysaccharide biosynthesis protein, at 2,523,542 to 2,524,822 _RS31060 Position (kb) 2522 2523 2524Strain fitness (log2 ratio) -2 -1 0 1at 2522.241 kb on + strandat 2522.308 kb on - strand, within BPHYT_RS31050at 2522.595 kb on + strandat 2523.259 kb on - strand, within BPHYT_RS31055at 2523.573 kb on - strandat 2524.097 kb on - strand, within BPHYT_RS31060at 2524.230 kb on - strand, within BPHYT_RS31060

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 0.1
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2,522,241 + +0.8
2,522,308 - BPHYT_RS31050 0.75 -1.9
2,522,595 + -0.5
2,523,259 - BPHYT_RS31055 0.73 -1.0
2,523,573 - -0.6
2,524,097 - BPHYT_RS31060 0.43 +1.4
2,524,230 - BPHYT_RS31060 0.54 +1.1

Or see this region's nucleotide sequence