Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07475

Experiment: 24hr PHYTO2 MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS07470 and BPHYT_RS07475 are separated by 280 nucleotidesBPHYT_RS07475 and BPHYT_RS07480 are separated by 194 nucleotides BPHYT_RS07470: BPHYT_RS07470 - LysR family transcriptional regulator, at 1,697,587 to 1,698,567 _RS07470 BPHYT_RS07475: BPHYT_RS07475 - nitrate reductase, at 1,698,848 to 1,700,308 _RS07475 BPHYT_RS07480: BPHYT_RS07480 - FAD-dependent oxidoreductase, at 1,700,503 to 1,701,894 _RS07480 Position (kb) 1698 1699 1700 1701Strain fitness (log2 ratio) -1 0 1at 1699.433 kb on + strand, within BPHYT_RS07475at 1700.234 kb on + strandat 1700.360 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 0.1
remove
1,699,433 + BPHYT_RS07475 0.40 -0.1
1,700,234 + +0.4
1,700,360 - -0.2

Or see this region's nucleotide sequence