Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31130

Experiment: 24hr PHYTO2 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31120 and BPHYT_RS31125 are separated by 71 nucleotidesBPHYT_RS31125 and BPHYT_RS31130 are separated by 100 nucleotidesBPHYT_RS31130 and BPHYT_RS31135 are separated by 287 nucleotides BPHYT_RS31120: BPHYT_RS31120 - pseudouridine-5'-phosphate glycosidase, at 2,538,714 to 2,539,667 _RS31120 BPHYT_RS31125: BPHYT_RS31125 - hypothetical protein, at 2,539,739 to 2,540,188 _RS31125 BPHYT_RS31130: BPHYT_RS31130 - hypothetical protein, at 2,540,289 to 2,540,492 _RS31130 BPHYT_RS31135: BPHYT_RS31135 - hexuranate MFS transporter, at 2,540,780 to 2,542,069 _RS31135 Position (kb) 2540 2541Strain fitness (log2 ratio) -2 -1 0 1 2at 2539.699 kb on - strandat 2539.700 kb on + strandat 2539.700 kb on + strandat 2539.786 kb on + strand, within BPHYT_RS31125at 2539.787 kb on - strand, within BPHYT_RS31125at 2539.888 kb on - strand, within BPHYT_RS31125at 2540.212 kb on - strandat 2540.328 kb on + strand, within BPHYT_RS31130at 2540.433 kb on - strand, within BPHYT_RS31130at 2540.433 kb on - strand, within BPHYT_RS31130at 2540.434 kb on + strand, within BPHYT_RS31130at 2540.492 kb on + strandat 2540.492 kb on + strandat 2540.560 kb on - strandat 2540.597 kb on + strandat 2541.066 kb on - strand, within BPHYT_RS31135at 2541.157 kb on + strand, within BPHYT_RS31135at 2541.158 kb on - strand, within BPHYT_RS31135at 2541.296 kb on - strand, within BPHYT_RS31135at 2541.312 kb on + strand, within BPHYT_RS31135

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 0.1
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2,539,699 - +1.0
2,539,700 + -0.1
2,539,700 + +1.1
2,539,786 + BPHYT_RS31125 0.10 -0.0
2,539,787 - BPHYT_RS31125 0.11 -0.2
2,539,888 - BPHYT_RS31125 0.33 -2.2
2,540,212 - -0.0
2,540,328 + BPHYT_RS31130 0.19 -0.5
2,540,433 - BPHYT_RS31130 0.71 +0.8
2,540,433 - BPHYT_RS31130 0.71 +1.2
2,540,434 + BPHYT_RS31130 0.71 -2.4
2,540,492 + +1.9
2,540,492 + -0.5
2,540,560 - -0.8
2,540,597 + +0.9
2,541,066 - BPHYT_RS31135 0.22 -0.2
2,541,157 + BPHYT_RS31135 0.29 -1.0
2,541,158 - BPHYT_RS31135 0.29 -0.1
2,541,296 - BPHYT_RS31135 0.40 -1.3
2,541,312 + BPHYT_RS31135 0.41 -0.6

Or see this region's nucleotide sequence