Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23985

Experiment: 24hr PHYTO2 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23980 and BPHYT_RS23985 are separated by 98 nucleotidesBPHYT_RS23985 and BPHYT_RS23990 are separated by 405 nucleotides BPHYT_RS23980: BPHYT_RS23980 - hypothetical protein, at 945,462 to 946,625 _RS23980 BPHYT_RS23985: BPHYT_RS23985 - carbohydrate porin, at 946,724 to 948,247 _RS23985 BPHYT_RS23990: BPHYT_RS23990 - N-hydroxyarylamine O-acetyltransferase, at 948,653 to 949,492 _RS23990 Position (kb) 946 947 948 949Strain fitness (log2 ratio) -2 -1 0 1 2at 946.315 kb on + strand, within BPHYT_RS23980at 946.316 kb on - strand, within BPHYT_RS23980at 946.316 kb on - strand, within BPHYT_RS23980at 946.822 kb on - strandat 946.869 kb on + strandat 946.869 kb on + strandat 946.869 kb on + strandat 947.269 kb on - strand, within BPHYT_RS23985at 947.286 kb on + strand, within BPHYT_RS23985at 947.286 kb on + strand, within BPHYT_RS23985at 947.545 kb on - strand, within BPHYT_RS23985at 947.595 kb on + strand, within BPHYT_RS23985at 947.772 kb on - strand, within BPHYT_RS23985at 947.772 kb on - strand, within BPHYT_RS23985at 947.941 kb on - strand, within BPHYT_RS23985at 948.361 kb on - strandat 948.424 kb on - strandat 948.446 kb on + strandat 948.446 kb on + strandat 948.467 kb on - strandat 948.483 kb on - strandat 948.676 kb on + strandat 949.185 kb on - strand, within BPHYT_RS23990

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 0.1
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946,315 + BPHYT_RS23980 0.73 +0.8
946,316 - BPHYT_RS23980 0.73 -0.5
946,316 - BPHYT_RS23980 0.73 -1.0
946,822 - +0.2
946,869 + -0.6
946,869 + +2.5
946,869 + -0.1
947,269 - BPHYT_RS23985 0.36 -0.1
947,286 + BPHYT_RS23985 0.37 +0.2
947,286 + BPHYT_RS23985 0.37 -0.9
947,545 - BPHYT_RS23985 0.54 -1.0
947,595 + BPHYT_RS23985 0.57 -0.2
947,772 - BPHYT_RS23985 0.69 -0.3
947,772 - BPHYT_RS23985 0.69 -0.0
947,941 - BPHYT_RS23985 0.80 +0.6
948,361 - +0.6
948,424 - -0.3
948,446 + -0.3
948,446 + -1.2
948,467 - -1.2
948,483 - +1.2
948,676 + +0.1
949,185 - BPHYT_RS23990 0.63 -2.0

Or see this region's nucleotide sequence