Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23150

Experiment: 24hr PHYTO2 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23145 and BPHYT_RS23150 are separated by 212 nucleotidesBPHYT_RS23150 and BPHYT_RS23155 are separated by 73 nucleotides BPHYT_RS23145: BPHYT_RS23145 - putrescine/spermidine ABC transporter ATP-binding protein, at 758,061 to 759,224 _RS23145 BPHYT_RS23150: BPHYT_RS23150 - ABC transporter substrate-binding protein, at 759,437 to 760,558 _RS23150 BPHYT_RS23155: BPHYT_RS23155 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data), at 760,632 to 762,080 _RS23155 Position (kb) 759 760 761Strain fitness (log2 ratio) -1 0 1at 759.420 kb on + strandat 761.248 kb on + strand, within BPHYT_RS23155

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO2 MOI 0.1
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759,420 + -0.4
761,248 + BPHYT_RS23155 0.43 +0.8

Or see this region's nucleotide sequence